RNA id: TU115584


Basic Information

Item Value
RNA id TU115584
length 1093
RNA type TUCP
GC content 0.53
exon number 9
gene id G85813
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 18031008 ~ 18036276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTTACTGTGGCCGCCATACCGTAAGGAGTGTGGTTCCCGGCGAGCCGAAAAATAATTACCGAAAATGGCCTGCGCCCGACCCCTGATCTCGGTTTATTCCGAGAAAGGAGAATCTTCAGGCAAGAATGTTGTCATGCCTGCTGTGTTCAAAGCTCCAATTCGCCCTGATGTGGTGAATTTTGTGCACACTAATATGCGCAAGAACAGTCGCCAGCCATATGCAGTCAGTGAACTGGCAGGCCACCAGACCAGTGCAGAGTCCTGGGGTACAGGAAGAGCTGTAGCCCGTATCCCTCGTGTGAGAGGTGGTGGTACTCACCGCTCTGGTCAGGGTGCCTTTGGAAATATGTGTCGTGGAGGTCGCATGTTTGCCCCCACCAAAACCTGGCGTCGCTGGCACCGCAGGATCAACACAACCCAGAAGCGCTATGCCATCTGCTCTGCTGTGGCTGCCTCTGCCATTCCTGCGCTTGTGATGTCCAAAGGACACCGCATTGAGGAAATCCCTGAGGTCCCACTGGTAGTTGAAGACAAAGTTGAGGGCTACAAGAAGACCAAGGAGGCAGTGCTCCTACTAAAGAAGCTTAAAGCCTGGAATGACATCAAGAAGGTCTACTCCTCTCAGCGCATGCGTGCTGGCAAGGGTAAGATGAGGAATCGCAGACGGATCCAACGCAGAGGACCATGCATCATCTACAACCAAGACGCTGGTGTCACCAAAGCCTTCAGAAATATCCCagGCATCACTCTGCAGAACGTGAACAAACTGAACCTCCTGAGGCTTGCCCCTGGTGGTCACGTTGGACGCTTCTGCATCTGGACTGAGAGTGCGTTCCGCAAGCTGGATGAGCTGTACGGCACCTGGCGTAAACCTGCTTCCCTGAAGATCGGCTACAACCTGCCCATGCACAAGATGACCAACACAGACCTGAGCAGGATTCTGAAGAGTGAGGAGATTCAGAAAGCACTTCGTACACCAACCAAGACCATCAACCGCAGAGTACTGAAGAATCCTCTGAAGAACTTGAGGATAATGCTTAAGATGCTGAAGCCCAAGAAGCCTGGGAAGAAGGGAGCACCTGCCAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115589 lncRNA downstream 14234 18016107 ~ 18016774 (-) True G85815
TU115571 lncRNA downstream 74379 17893907 ~ 17956629 (-) False dennd4a
TU115567 lncRNA downstream 138541 17888867 ~ 17892467 (-) True G85806
TU115568 lncRNA downstream 138541 17891757 ~ 17892467 (-) False G85806
TU115552 lncRNA downstream 165582 17861719 ~ 17865426 (-) False ppcdc
TU115714 lncRNA upstream 307266 18343542 ~ 18344341 (-) True G85910
TU115832 lncRNA upstream 578312 18614588 ~ 18627153 (-) True syt7a
XR_005640064.1 lncRNA upstream 638987 18675263 ~ 18677985 (-) True LOC120564122
TU115929 lncRNA upstream 720776 18757052 ~ 18761076 (-) True G86064
TU115939 lncRNA upstream 731219 18767495 ~ 18769138 (-) True G86072
XM_039809895.1 mRNA downstream 24478 17932205 ~ 18006530 (-) False megf11
XM_039807517.1 mRNA upstream 5352 18041628 ~ 18047840 (-) False lctlb
XM_039807514.1 mRNA upstream 5352 18041628 ~ 18047840 (-) True lctlb
XM_039807515.1 mRNA upstream 5352 18041628 ~ 18047125 (-) False lctlb
XM_039807518.1 mRNA upstream 5963 18042239 ~ 18047840 (-) False lctlb
XM_039807521.1 mRNA upstream 11828 18048104 ~ 18050749 (-) True snapc5
unassigned_transcript_375 other downstream 103890 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115062 other downstream 1222592 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_374 other downstream 1266222 16764715 ~ 16764786 (-) True trnah-gug_10
TU114908 other downstream 1590043 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 2486926 15514778 ~ 15544082 (-) True G85133
XR_005639940.1 other upstream 5981 18042257 ~ 18047839 (-) False lctlb
XR_005640159.1 other upstream 395764 18432040 ~ 18432135 (-) True LOC120564822
TU115790 other upstream 463052 18499328 ~ 18502866 (-) True tmem258
TU115791 other upstream 463052 18499328 ~ 18502866 (-) False tmem258
TU115837 other upstream 609250 18645526 ~ 18648084 (-) False syt7a