RNA id: TU115929


Basic Information

Item Value
RNA id TU115929
length 3405
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G86064
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 18757052 ~ 18761076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCACTACAGACTTTTTTTATTAGGGTGCAGACATCCATTCAATATATTAGAAAACCAACATGTGAAGAAAGGCTACATGGGGTTTTACTTCAAAAGAAGGGTATTATTCAAGACTAATATTTATacacatataatatacataacCATGCTCCCTTGCAAGAGAGGAATTGACAAtgaaaaactatgaaaataatcttaTCAATGGTAATAACCATCCATAGCATAATAGGCTTTGACAGAGCAGCAATTTCTGGAATTGTGCGATGGCCTTTGACCTTCAGCTTTGGGTAACTTCTCCCTCCACTCACTAAGTGAGAGGGTGCTGCTCTGAAATGAGTTTGACTGTCTGGAGGACGGGCAAAGCGTCAACGTACATTTTTTTATAGCTTTGCAGAGAGTAAAGTGCTGTGGTCGACTGACCTGGTTCTGCGGTCGTTTTAAGAGCATGGAGTGTGTCTGTggtcacaaaaataaaaatgtatgtggGGAAGTGCATAGGTGGAGAGGTAGGTGGGTTCAAACACTTGCATgtggaaacaaaaacaacccaACAGAGTTTCGTGGACTTCCCCCTGTCATCAGGACGTACGTGCTGAATGTAAAGACAGGCCTGAAATGTGTTTCAGAGCTGTTTTTTACTACACCAAAATCTTGGTCACTGCTTGACAACACGTTAGATTTGAACTGTGAGTGGGGTAAATTTGTAAATGCGTGACGTGAGTgtgttcacaaaaaaaaaaaaaaaaaaaaaaatgaaatactaaaAGTGGGAACTTTAAGGCCCAAGCTGCCTTCTGCGCTCGTGGAATGTGCATGGAGGAAATATGTGATGCACGCAtaggaatgtgtgtgcatgttagtGTTCCCCTGATGCACCGTCGTCGtagatgttttgtgtgttgcacCAGCCGTAGGCTTTCTGGCTGTTGTCGAGTCTCATGTTGCTACTGTGGGAGCCTCTCAACATAGGTCTTCCTGTGACAAATGGGCAGCAAGGCACACAAAAGCCACTCCAGCTGTTCACAGAAAGGCATCACAATCCAAGTCAAGCTGTGGTGTTCATGTACATAGGACATTCTGCTgcttctctcccctctctctctcacactctttgGCACTGGGAGGAATGTGTAgaagcagggagggagggatggatggagggatagAGGAATGGAGGGGGGTTCCCTGCTCttcgtgtctctctctctctctccccgtctATTTGGAGAGTTTGCTGATGACACGGATCAGTGCTCCATTTTCATCTTTAAGACGCTGGTTGTCTGCTCTTAGGTCGACCAGAACCTTtagctcctcctccagctctgccatTCGACGCTCCAACATCCTCCGGTCCTGATGTCAGGGAAACGTGAGGGAGAGTGGGGGGCAGAAAGGAGGTGATGTAGAGAGGAAGACGGACCACGAAAGGTGAGTGAAAACAGGTAAGAAAGTGGTTCAAGTGGGGAGGAGAGAGCGTCAACAGACAGCAGGGGTGGCAGTAGTGAGGCAGATGAAgctacaataacaacaacaataacaacaacaacaacaacaggtaaCACCATCAGCTGGGATGCATTACCTTTCTTTCCAGCTCCAGCAAGGCTGAACAGTCAGTGAAGCGCTCTTGCCTCTAATGGATACAACAAATCAATAACGTTAACATCACCACAACAGTTGCTTCACATGATCACTAGAAGGCCTGTGTTCAAATAGACTAGAATATCAAAGTGACTACCTGCAACATCTTGATATGGTTGTCTCCTTTGCTGATTTGTATTTCCAATTAAAGCGAGACAACAACCACTGTGTCCACAAGTGACAATTACAGGATGATGGTAAAGGGTAAAACACAGTTTAACACTAGCACAAGTAgtcatagggccctattttaacgatctaatcGCACAGCGTGTAGAGCacggcgcaggtgcgtttagggcgtgtccaaatcctcTTTTGATAGTTTGACAGcgggaaaaaagggtccgtgcgccaggcggatgcatggttcaaaagggttgttgtagtgtcttcattaattcctaggtgtgttttgggcgtaccatgtaataaaccaatcacagtgtcatctcccattccctttaaaagccaggcgcgtttgtacctgcTATTACGATGGCAGATTTGCACTGTaatatttgtaatcttttgcatgtttgtgtgctgctgcgcgtccccgtctgtaacaagcatagtgtgcgcgcgctgtgcacgagcctaggcgcattttactaattctctgttaaaataacaatgaaatgctgcgctattgactttagaccaggttttttgttggtcaatggcgcaatcACTTCCTGCTGTCTCAAgctagcaatacgccaagaattcacctccctgtaaaaccagcacgcccatgggcgcagagatgggcgcaggtgcatttgctatttaaaccatgtgggcgctggacgggaaattgatgactgcgttggtcttaaacttgcaaagacacttgtgtcgggctttgcgctgcgccgggtgcaagatatgGCCCATAAAGTTAACAATGTCATGTTAGCATTATCTatttttgctaacattagctaacttcGGCCACCATcagctactggtcataccagaccaagtaaggCTGTAGAGACAAGCCAAGTGCACTGACACGAGCAAGGACGCATTAGTGTTGCTAATGAATTTGTTATTTGTAAGAGGATGACTGAATTAGTTCTTCATTTAAAAGAATTTTAGCTTTAATGGCATACAATACAGATTAAACcaggataaaaaaataacagagtGTTTTGTTTCCATCTTCAAAAATAGTATTTGGGATAAATAGAATAAGATTTGAGTAGACACAAAGCATGATGATGGCCACCTGAACTGAACACAGAAACAGGAATTCAAAGAAAATAAGATGTCAATACTGGTCACAATTATAGAACCTGTCGACAACTGGTTTCACCACTATAAGATTCTTCCTTTTGTCTTTGCATGGGAAGGATTACAATAACAGTTTGTGTTTAacttggtgtgtgtctgtgtcgtcACCTGTGTGGCCTTTTCCAGTTCCAACCTGGTCTGACTGATAAACCTCTGGGTGTCCTGCAGCTGAGACTGGAGCTGGCTGTTCTCTCTGGAGACCTCCTCGAACAACTGACACAAGCAAACATACTGAGTAGTAAATAACTGGGACagacaagaaaaacaaatttttcTGACCTCAATATCAGTTCGGTCTGCTGACCTTCTTAAAATCATTGGCGTCAGAGCCTTCTCCCTGGGTGCAGTCGTTAAAGGGCCTGAGTAGACGAGCAGAGCAGAGGTCAGAGACACCGCTATCATTGAGACTCTGCTGACAGAATAAAGAAAGAACTTGAGTTCATACCTGGAACTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640064.1 lncRNA downstream 79067 18675263 ~ 18677985 (-) True LOC120564122
TU115832 lncRNA downstream 129899 18614588 ~ 18627153 (-) True syt7a
TU115714 lncRNA downstream 412711 18343542 ~ 18344341 (-) True G85910
TU115589 lncRNA downstream 740278 18016107 ~ 18016774 (-) True G85815
TU115571 lncRNA downstream 800423 17893907 ~ 17956629 (-) False dennd4a
TU115939 lncRNA upstream 6419 18767495 ~ 18769138 (-) True G86072
TU116127 lncRNA upstream 249849 19010925 ~ 19012081 (-) True G86195
TU116126 lncRNA upstream 250030 19011106 ~ 19012081 (-) False G86195
TU116201 lncRNA upstream 370775 19131851 ~ 19132166 (-) True G86253
TU116210 lncRNA upstream 395694 19156770 ~ 19160181 (-) False LOC120564082
XM_039807989.1 mRNA downstream 30065 18717032 ~ 18726987 (-) False pidd1
XM_039807988.1 mRNA downstream 30066 18717032 ~ 18726986 (-) True pidd1
XM_039807992.1 mRNA downstream 41607 18699310 ~ 18715445 (-) False slc25a22a
XM_039807990.1 mRNA downstream 41608 18699310 ~ 18715444 (-) False slc25a22a
XM_039807995.1 mRNA downstream 42456 18699310 ~ 18714596 (-) False slc25a22a
XM_039808817.1 mRNA upstream 31379 18792455 ~ 18798253 (-) True best1
XM_039808710.1 mRNA upstream 50542 18811618 ~ 18820110 (-) True epx
XM_039808691.1 mRNA upstream 60005 18821081 ~ 18832792 (-) True hps5
XM_039808731.1 mRNA upstream 71886 18832962 ~ 18855299 (-) False gtf2h1
XM_039808729.1 mRNA upstream 71886 18832962 ~ 18842390 (-) False gtf2h1
TU115837 other downstream 108968 18645526 ~ 18648084 (-) False syt7a
TU115790 other downstream 254186 18499328 ~ 18502866 (-) True tmem258
TU115791 other downstream 254186 18499328 ~ 18502866 (-) False tmem258
XR_005640159.1 other downstream 324917 18432040 ~ 18432135 (-) True LOC120564822
XR_005639940.1 other downstream 709213 18042257 ~ 18047839 (-) False lctlb
TU116123 other upstream 246120 19007196 ~ 19010916 (-) False G86194
TU116124 other upstream 246120 19007196 ~ 19010916 (-) True G86194
TU116306 other upstream 554359 19315435 ~ 19317410 (-) False arpp19b
TU116428 other upstream 626746 19387822 ~ 19388575 (-) True G86402
TU116584 other upstream 809226 19570302 ~ 19571922 (-) False cep152

Expression Profile