RNA id: TU116631


Basic Information

Item Value
RNA id TU116631
length 374
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G86549
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19723973 ~ 19725193 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGGTAAACATACCTTTTCTCAGCTCCCATGCGTCAATGTCTGGCTTGTTGAAATAGGTCACCCAGCGGGCATCAAACTCCTCATCAGTCTCTTGCTTCCCATGTGAGTAACACCTTGAGGCCAAATACCTTGACACCCTGGTTGCGTACGGGTTAAACTCCGGACACCGGAGAACGAGAGTTGGACGGCGGCTCTGAACATGATGCGGGACAGCCAGCTACACGAACTCGAACCGGTGATATTTTGAAGGAGCAGCGAGCAGGAGGAAGCTAGCGCTACTTGCTTGCTTAGCCCGTCACGTACGCGATCCCGTGCTGCGCATGTGCAAACTGCAGCTCATCGGTATTCATAGATAGGTATTTAGCTTTTTT

Function

GO:

id name namespace
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116624 lncRNA downstream 28158 19694995 ~ 19695815 (-) True G86543
TU116619 lncRNA downstream 44884 19674923 ~ 19679089 (-) True G86540
TU116589 lncRNA downstream 105927 19616653 ~ 19618046 (-) True G86517
TU116588 lncRNA downstream 106210 19609405 ~ 19617763 (-) False G86517
TU116587 lncRNA downstream 111772 19609405 ~ 19612201 (-) False G86517
TU116652 lncRNA upstream 49114 19774307 ~ 19777043 (-) True G86566
TU116662 lncRNA upstream 96347 19821540 ~ 19823373 (-) True G86575
TU116708 lncRNA upstream 289145 20014338 ~ 20015812 (-) True G86605
TU116779 lncRNA upstream 516240 20241433 ~ 20241850 (-) True G86652
TU116787 lncRNA upstream 525697 20250890 ~ 20252526 (-) True G86660
XM_039808279.1 mRNA downstream 16846 19700154 ~ 19707127 (-) True LOC120563845
XM_039809050.1 mRNA downstream 94083 19623665 ~ 19629890 (-) False parp16
XM_039809049.1 mRNA downstream 94084 19623665 ~ 19629889 (-) True parp16
XM_039808102.1 mRNA downstream 125611 19581787 ~ 19598362 (-) True atp8b4
XM_039808104.1 mRNA downstream 125611 19582672 ~ 19598362 (-) False atp8b4
XM_039807430.1 mRNA upstream 28211 19753404 ~ 19761910 (-) True LOC120563329
XM_039807429.1 mRNA upstream 28220 19753413 ~ 19761910 (-) False LOC120563329
XM_039807428.1 mRNA upstream 28220 19753413 ~ 19761910 (-) False LOC120563329
XM_039807431.1 mRNA upstream 28317 19753510 ~ 19761910 (-) False LOC120563329
XM_039807432.1 mRNA upstream 28543 19753736 ~ 19761910 (-) False LOC120563329
unassigned_transcript_376 other downstream 41056 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 152051 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 335398 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 406563 19315435 ~ 19317410 (-) False arpp19b
TU116124 other downstream 713057 19007196 ~ 19010916 (-) True G86194
TU116763 other upstream 527446 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 1081689 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 1152518 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1987849 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 2009813 21735006 ~ 21739328 (-) True LOC120564778

Expression Profile