RNA id: TU116763


Basic Information

Item Value
RNA id TU116763
length 2638
RNA type TUCP
GC content 0.48
exon number 8
gene id G86638
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20252639 ~ 20259259 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGATTGTCTATTTCTGTCCTGGAACGATTCTGTTTGTGAGCGGGCTCAGTGATGTCACAGGAAAGCTGCCCATTGATGTTGCGGATGGGTACTCGTGTCCTGGGGGGGACAGGAGGGGGTGCTTGGCCTTGTGTACATGGTAAACATGCACTAGGAAGCCTGGTTCTGAGTAAAGGGACAGGGCGACGCACTGGGGGAGGCCCATTTGTGCTTTGGTGCTCTGTACACCCAggaccacctcctcctcctcctcctcctcctcctcctcctccatcaccCCAGAGATTGCCTGGGGGGTCGGGTTGGGATACGATCCCAGTCAAGGTGGACCCGTACAAATGAGTCTCATTATCAGCTAGATCCTCACAATAAGTGAGTCTTCCAGGGGTTGAGAAACATGGCCGTTCAGTGAGAATGACAGCAACGGCACTCCACTGAATGTGTCACAAAGGTGTCAGCTGAGGTGCACGCAGCAGAGGGGTGTTCTGTACTGTATGAGGGAGGAGATCGAGCAGAAAGAAATGCATTTCAACAGCACAACTCCCCACATTTCACCCCCAAACCACAAACCTGGATTTCCTGGTTACTATGCACTGATTCCCTTTGTACTACTCATACTGATTGGATGTGTGCTGGCAATGGTTGTTTATATCAGGAGGAAGTCCAGACTAGATGAGCTGCGCCATAGGATGATTCCTCTGTACAGCTACGACGCCGCAGAGGAACAAGAAGAGTGGAAGGACGCTGgcagggaagaggaggagctgaCTGAACCTTTGTATAAGGAGGGAAAGCTCTTGTTTTCATCGGTCTATGGAACATGAACAGAAagtcaagaaagaaaaaataatgtgGCCAATTACAGGAAGATTTCTCCATTTCTATTTTGTGTTGCAGATGCTTTACGAATATAGACTGGActcttattaataaaaacatcatTCAACAGCTACTAGCGCCACATGAAATGATTTAATTTCTTCCCACATGACATGTTCTATGCAGAGCAACAGACAGATGACACTACAGGCTAATCCTCTCTTTTGCCTTAGTTAAGATTTTGTTTAAGACTTTACCAAGTGTTTTGAAGGATACTGCAAGATTGTCATTTTTGAGCAATTACCTGGAAGCTAAAATCCAACTTAAAACCCTTTTTGTTTTGCGTGTGTATttctaaaattattttttttgcattaggCTTAAAAAGGCATGAAAGACACACCTGTTTCTGCTTGGTAATCAGAGGGTTTACTGGGTTGGTGTTTGGAGGTTCCTCAGGTTGACACATCTTCACACCATCTGGGGATTTAACAGACAGGAAGATGGCATCACAAAGAAAAAGCAGTCTGGAGGCCCATCTGTTGGGACCACGCTGGTTCCTGACCTCCATCCTGTTGGCCACAGCGCTGGTCCTCCCCGCTCTGAGTCTGGATAGCCTGCTGTGTTACTTCTGTCctctgcagcagaaaggcaAGTCCTGCCCCAAAATCACCAGCCAGTGTCTGCCTGATCAGCGCTGTTCCAGCTCCAAAGGCCACTACGGCTCCCTCCACATCCTGTCGGCTCAGGGCTGCGTGGACACTGAACTCTGTGGCTCCCATGAAATCACCTCTTATCGGGGGGTCAAGTACAACGTCAGCCACGCCTGCTGCTGCAAAGACGAATGTAACGGCCAGCCAAAGTCTGACACCACACTGAAGATGGTGTGGCCTGTGCAGGAAGCTCAGTGGTGAGATTAGACTTCATCAGGAGAAGCTCTGAAAAGTTTTTGCCTGTTTGACTGACTGGAATTAAATCTTAAATGTGCAGCTCCTGCACGTTGCTGTGTTGTGGTTCTACCTTCTCCTCCCCTCGATGCTCTGTGACAATCTGCACTGCTACTACAGCTACATCCAGGAGAAGGAGGGGACCGTTGAGCTCATTGTGACAGAGTGCCCCCCTGATGAGCTGTGCTTCAAGGCCAATGGTCGCTATGGCAACCACAGCATCCTGTCAGCCAGGGGCTGCATGGCAGAGGGGGACTGCAGCCAGGTGCACAGCCTTACCTTTAAAGGAACCGTCTACAAAATGAGCTACgactgctgtgattggccaTACTGTAACTCCTGCCCGGGCGTCACACCTAAATCCCTCTACTTTACTGTAACACTTGTGATTGTAGCTGCGATGGCCAGCTGCCTGTGACACCTGATGCGCTACTGTATGTAACGACCATTTTTAGGGGTTCATGTAAAGGGGGAAGCCGTTTACACGGTCCAACACCAAGTGAGCAGTGCTCAGAGACATCTCTGCAGCCTCAGCATGGAGTAATGCAGAGGGCCTGCAGCAGAATGTGGTGAAGGCCCAGTCTGAAGACACTGAGGTGTGCACCATGGTGATGTCAGACATATTCTTATACAATGTCTTGGTaacaaaatgtctttttataATGTATTAATGTCTATAAATAAAGATTTGGAAACACAATTATATTCTATGATCTTTTGGATACTTTCAGGcacttttctctctcacacCAACATGCACATACCAGACAGGGCTGGTGATATATTtatcttattgtcaacaaatattTGTTTCCATGTCCTGATATGTTATTTATCTGTGctatagagctccattgttgtccaagaAGA

Function

GO:

id name namespace
GO:0016433 rRNA (adenine) methyltransferase activity molecular_function
GO:0008170 N-methyltransferase activity molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116787 lncRNA downstream 113 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 10789 20241433 ~ 20241850 (-) True G86652
TU116708 lncRNA downstream 236827 20014338 ~ 20015812 (-) True G86605
TU116662 lncRNA downstream 429266 19821540 ~ 19823373 (-) True G86575
TU116652 lncRNA downstream 475596 19774307 ~ 19777043 (-) True G86566
TU116815 lncRNA upstream 143485 20402744 ~ 20461823 (-) True G86686
TU116909 lncRNA upstream 439556 20698815 ~ 20699637 (-) True G86761
TU117040 lncRNA upstream 649130 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 843371 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 881248 21140507 ~ 21146513 (-) True LOC120563411
XM_039809491.1 mRNA downstream 137255 20088128 ~ 20115384 (-) True LOC120564471
XM_039809628.1 mRNA downstream 169039 20075491 ~ 20083600 (-) False si:dkey-29p10.4
XM_039809626.1 mRNA downstream 169039 20075491 ~ 20083600 (-) True si:dkey-29p10.4
XM_039809181.1 mRNA downstream 193516 20016743 ~ 20059123 (-) False LOC120564329
XM_039809180.1 mRNA downstream 193517 20016169 ~ 20059122 (-) True LOC120564329
XM_039807722.1 mRNA upstream 16618 20275877 ~ 20293118 (-) False LOC120563518
XM_039807723.1 mRNA upstream 16618 20275877 ~ 20292706 (-) False LOC120563518
XM_039807724.1 mRNA upstream 16618 20275877 ~ 20292582 (-) False LOC120563518
XM_039807721.1 mRNA upstream 16618 20275877 ~ 20292582 (-) True LOC120563518
XM_039809648.1 mRNA upstream 331043 20590302 ~ 20596104 (-) False LOC120564552
unassigned_transcript_376 other downstream 569722 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 680717 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 864064 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 935229 19315435 ~ 19317410 (-) False arpp19b
TU116123 other downstream 1241723 19007196 ~ 19010916 (-) False G86194
XR_005640056.1 other upstream 547623 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 618452 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1453783 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1475747 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 1475747 21735006 ~ 21739328 (-) False LOC120564778

Expression Profile