RNA id: XM_039808284.1


Basic Information

Item Value
RNA id XM_039808284.1
length 3587
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC120563850
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20877668 ~ 20887626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAGTTTCAGGTTACTGTGCGCACCTGTGACTGCAGCTCCTCCTCAGTAACACTATGTGTCACTTCTCCAGGGTGTCCACACTGGAAAACACCCTATCCGTTATTGTAAATGATGTTCTGTTGTTTGCATTGTCCCGGCTACCCTTTCAGTTTGATGCCCGGTCGATAGTTATAATGGTGCGTATCGCGAGTATTTGGAGACGGGCGTAGAACTGTGTATCCAAGCAACAAGGCCAGCACACTGAGTGGACAGAGGCACATTTACAGAAGTGAAAGGTGGATTTTAAAGCGCTACAGCTCGGGTTGGTTGGTATTTTGTTGCAAGGGACAGGTTTGTGTGTTATCTGCGAGTGGCAAATATTAAGAGGAATttcaagtggatttttttttcctttttctttttaaaaggaaATGACTTCTTCTGTCGCGCTGACGGAACCCAGAACTGGCCCTTTGTATTTCTTTGACCAGCCGACAAAACGAAACAGAATTAAAGGGGCGAAAAGCAACATTTTGCATTTCAATTTGGCAAATGAAGGAGCGAAGTCAGAAGATACAATACAAAGTAATCGAGATGACAACATGGAAGGTAAGAGTGATGAGCTCACTCAGAGGCTGCCGGGGGATACATGTGGAGATGTTAAACCTGATACCTCATCCGCTGGCGGTGCTACACCCAACATAAAGTACCACGATCCGATGGATGCATACAAACGAGCAGCCCCTCAGTTATTAAACGAAGTGGCTCGCCTACTTTCACAACATAAGTGGACTGAGGAGGGGCGTATTCCTCACGGGATTGTAAATATTCTAAATTATTCCTGGAAGGAACTAACTGCGGGCTCGGTGCATTTCAGAAGTTCGGAACAGACCGGCAAACACGGAAAGTCCAAAGGCTTCCTGAAGTCGGATGAAGCTCGATCCCGTCAGTTGTCCGCCAGAAGTGACACGAGGCAGGCAGGAGAGGGAATCTCATGTGTTGTGGAAAACGTTGGTCCCTCTGTGGGAAAATCACAACTCAGCTCAAATCAACGCACGAAAAAGCGCAAACACAATTCCAATAGAGCTCGCAACTACACCACCGTCAGTTTCTCCATCTCATCCAACAGCTGCAGTAATCCAGGTTGGATCATCCAGCCAAAGCGGCCCTCCTGTGATGAGCCTCGGCAGATCAGTTTGTGTCAGTGGGTGCTTGAGCAACTCCGTGTGGCAAGAAGTCCTGAAAAACTGCTAACAGCTGAACAGGACCTGAACACACCGCTCACACTCCGTCACTATGGTGATGCAAAGGCACAGCTGAAGGACAGGAGAGCGAGGAGAACGGCGCCGCCTGTTACTGTCGTCAATGGGATGCCCCAGATACCAGAAGTGAAGCAGCAGGATCCTGCACGGCAGAAACTACACTACAGGATCAACGACAGCTCCTCGTTCATATACTACCCGTCTGGTTGTATCGCAGTATGCCAGAGCCACTCAGGTCTGCCCTGTGGAGGCTTTTATACCAACGTGTTCAGTGACAGTGAGTGTCCCGTTATTCTGGCGACTATCACAGCATTCGGGCACGGGTCTGTGACACATCCTCTCAGCTCTGCCATTACAGCCGTGTGGGACCAGCACGGTGGATTCACATGTGACCATAATGGGAACATAACTAAGGAGTGGAGCTGGCAGACAGACCACACACTGAGGGAGAAGATTGTTATACAGTTGTCAGATGTAATCTCTGTGAGGCTGCTCAGTGGCACTTCTGCCATGCTCAGCTTCAGGTGTGACAACGAAAGTGTTCAACTTCCTCTTACTGCTCTGTCGAACATTAACCAATCACAGGAAACGACTTGTTTGCAGACTGAAGGAAAGTTTACCTCTTATTTTGCTCGAGACCTCCTGCTGGCAAGGAAGAAAACATCCCTTGCTGTGGTCCTAGAGAGCAAGAGGAACCTGACGCTAACACCTGTGTCTGTGTGCTCCCGGGAGGTCTTCCAGATGGTCAGAGAGGTGGAGGGGCTGGAGGAGCCATCAGCACAGTGGAGAAGAAGAGGGCATGTTAGCAGGGAGCTGAAGAGACTACAGCAGAGAGTACGAAACACCCTGGGAGGCTGGCTGGATTATTATCGAGTGGCCATCGGTATCAAGTGTACTGACACGGAGCGGATGCCAGATGGCCCACTGAGGACCAGGCTGAGGAGAGAGGTACAGTCAGCTGCTCTGCCCTCCCTGAACCCACCTGAGCGGGCAGATGCTGACCCAGTCCGGCCTGAGGAGGGCAGGAATGAGTTACAGGAGCTGCACAGACATCTATCAGTACCAGCAGAAAGACCTCTGGACTCCAACGTCAAGCTGCCAAGGACGCGAAAAACAAAGGAGGAGCCCCGTGTCACACAGATAGGACCCCTTAAAATGTATGGCAACATCCAACTTGAGTCAGTAATTCTTCCAAACAGTGCAGATTTGCAGCCCTTCGCTTCCACCGGCTGTCCAGCCCTGCCGTTGTTCACCCCCTCCGTCCCCCTCACAGTGTGCCCTGCTCTGCTGAGAGCTGCCGTGCAGGGGGAAGGGGGGCGCAGGCGGTGCAGCTGCAGCGCTGCACTGATGCCAGTGGTGACGGACCTGGAGTACGATGCCTTCATTATGGGCCAGCTTCCACACAGTCAACAGATCCTAGTGGTGTGTGTGACTCTGCCACTCCAACCCGACAACACACATGCAGTGTTCGGCCTGGACGTGCTGGAGCATCTTTACAGGAGGAGGAACACGCACAGAACCATGCCGTGTACACAGtgCCAGATGGATTCATTTCGCTTGGTGAGGTATGAGATGTCAACAAGGAAGCCCAGCTGTGGAGTGAAGAACATCCTGCTGCAGCAGCGGCACAATGCTGCTCCTGGGATGGTCCTGATGTACATCAGAGGGAAGCTGCTATTTGTTGGCTACATATTCAGTGGTCTCAGCTGCTCTGTCACGGACCTTCAAAAGCAAATCTCCAGAACCAGGAGAGACTACAGATTAGGTTTGAGCCTCCCTTCAGACTACAAGTTCAGTGATACAGTTAACACTCCTGCAGCCACAGATGAAcacaattcccatgatgcaacacTAAAAGGACGAGACATCACACTGACTGCTTCAGTAGAAAAGGAAAAGGCCAATGACAGAAAAAACAATCACATTCCTGAGGTATCACACCAACGACAGAGAGACTTTTGTATCAAACCAAAGAAGACTTCAGCACTTCCTCATGTTCCTGTTATCACACACTGAATATGCTCCAGTAACACGATTATATCTGTATTAGTCCAATGTAGTTAACTCTCCAAACTGCATCAACTGTGGGTTAATTCTTCAGCTAAATGTACAAACTACAAACGCCTCATTTGTTTACTATGCAGGTTGGCAACACTGTTTAGTCAAATCTGTACTTGAAATGCAAAATGAtttttgacttttggtcataagAAGTACATGGGCAACTCTTAGAGGCATCAGGTCTAAAGATCAAAGAAAATCTGATGTTTCATTGGGATTTTCGTCTTATGTAaatatcaatgggaaacatctgcagatttaataaaaaatataataaaaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116909 lncRNA downstream 178031 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 415845 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 613462 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 625142 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 635818 20241433 ~ 20241850 (-) True G86652
TU117040 lncRNA upstream 20763 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 215004 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 252881 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 357384 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 481937 21369563 ~ 21370658 (-) False dnajb9a
XM_039807909.1 mRNA downstream 534 20859420 ~ 20877134 (-) True LOC120563620
XM_039807910.1 mRNA downstream 1393 20859420 ~ 20876275 (-) False LOC120563620
XM_039807911.1 mRNA downstream 18730 20850776 ~ 20858938 (-) False nr2c1
XM_039807912.1 mRNA downstream 18894 20850776 ~ 20858774 (-) True nr2c1
XM_039807913.1 mRNA downstream 18906 20850776 ~ 20858762 (-) False nr2c1
XM_039808288.1 mRNA upstream 7178 20894804 ~ 20904815 (-) True LOC120563851
XM_039808289.1 mRNA upstream 7178 20894804 ~ 20904814 (-) False LOC120563851
XM_039808291.1 mRNA upstream 31604 20919230 ~ 20931076 (-) True hal
XM_039809231.1 mRNA upstream 53328 20940954 ~ 20973166 (-) True LOC120564353
XM_039809234.1 mRNA upstream 53328 20940954 ~ 20973165 (-) False LOC120564353
XR_005640056.1 other downstream 49065 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 618409 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1194751 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1305746 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1489093 19387822 ~ 19388575 (-) True G86402
TU117396 other upstream 825416 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 847380 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 847380 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1801535 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1803422 22691048 ~ 22706196 (-) False parvg

Expression Profile