RNA id: TU117418


Basic Information

Item Value
RNA id TU117418
length 1617
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC120564778
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21735006 ~ 21739344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGTGACCGCCCTTCGACAGGAGTTTCCACGACAGCTGAGTAGCAGCTATATACGTTTTTCACCTGTAACATAGGTCCTTTTTAACTCCAGTGAGTCGAAGTTTCGTAAAATGGGAGACAAGAAAAGCCCTACAAGGTAACACATGTCGCTAGTTTCTATGAAAGAAGACTTTATCGGGCCGTTTGAGAACAGAAAGCTCGGTCAATGGATGGAGCTGTTTTACTGAAGTGTTCATGGCGGCTGGCTGCTGGTTTAATATGGGGCAACTGCCTGTGTGAGCTGAAAGCTCCCTTTTCCTCAAAGACTGACTTCTGAGCAGAAAAGAACTTTAGAGCAGTGTCTTTCCTGTTCTGGTAATCTTCACCTAACGGGGTTTCTTTGAAAGCATTGCGCTCATTTAAATTGTGGCGTTATCAcagtggttttgttttgtttttgtctgaagGCCAAAGCGGCAATCGAAGCCCTCCGCCGACGATGGGTACTGGGACTGTAGCGTCTGCACGTTCAGGAACACCGCTGAGGCGTTCAAGTGCACGATGTGTGATGTCAGGAAGGGGACGTCAACTCGaAAACCACGGCCGGTTTCTCAGCTGGTTGCACAGCAAGCAAATCAGCAGTTTGCACCACCCACACTCCccaaaaaggagaagaaagaaaaatcgGAGAAAGACAAGAGTGATAAAGAACTAAcactaaaaaagaaaagctaTAAAAAGATGAGGCCCAGGTTAAAAAACATAGaccggagcagcgcccagcatCTAGAGGTCACAGTTGGAGACTTGACTGtaataatcacagactttaaggaGAAAGCCAAACCCACGTCCACTTCAACAAGTGCTGCCTCAGCAGACCAACACAGCCAAAGTGGCTCAAGCTCTGATAACACTGAACGAGGGGTCTCCAGATGCTCTTCGCCCCGCGGGGAAGGCTCGCCGGTTAATGGAGAGACTCACTAACTTTCACACTCCCAGTCAGCACAACCCATTCTTCTGCACTCTCAACAGCCTTGACTAGAGATTAAACTTCAACATGCATTAATAATACTATACATGCCAATATGATAGCATTCACTTCCTTTGGGACTGTATTTTTCACTGCCTTCCCATAATGATAAAGAATTCAGGAGTCAGGACATATGCTGTATGCTCAACTCAAAGAACTGTTGCAGCAAGATCTGTCATGATGAACTGAAAAAGGAACCGTAGCATTAAATCCTGAATGTCAGTGGAAGTGTGCCACGTGTTGTGGTTACTTGTGTTTTAACACCTCAGTGTTACATCAGCATCACACTGAGCTGGTTTTTGCTGCACCGAATAAATGATACATTATGAAAGAAAATAGGAAGAAGTCATCTCAGAATTGTAGTTTATCTTTgaattttgttattatttgccCTTAATGGCATCCTATGTTCATAAAATCTTTTTAGCATTATTTCCACTTTGCCATTATCAGTAAACCATAACACTGTTGGTTAATAGCCTTATCCGGCTCTCATTTTATGCCATTGGATGCAATAATTTTTTAACTAACATTTTAAGAAACAATATTGAATAATTATTCTAAGTATGCTTCTCATTCACTTGGTAGAGTTGAGCATGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117411 lncRNA downstream 9348 21724923 ~ 21725658 (-) True G87148
TU117376 lncRNA downstream 185147 21546658 ~ 21549859 (-) True G87123
TU117371 lncRNA downstream 222478 21486532 ~ 21512528 (-) True G87120
TU117350 lncRNA downstream 268760 21462705 ~ 21466246 (-) True G87107
TU117338 lncRNA downstream 364348 21369563 ~ 21370658 (-) False dnajb9a
TU117515 lncRNA upstream 266171 22005499 ~ 22008395 (-) True G87232
TU117537 lncRNA upstream 331630 22070958 ~ 22082538 (-) True G87249
TU117542 lncRNA upstream 366552 22105880 ~ 22106255 (-) True G87254
TU117622 lncRNA upstream 548616 22287944 ~ 22355196 (-) True G87320
TU117629 lncRNA upstream 611064 22350392 ~ 22366978 (-) False LOC120564428
XM_039809950.1 mRNA downstream 912 21726086 ~ 21734094 (-) False LOC120564741
XM_039809949.1 mRNA downstream 918 21726086 ~ 21734088 (-) True LOC120564741
XM_039809952.1 mRNA downstream 968 21726086 ~ 21734038 (-) False LOC120564741
XM_039809749.1 mRNA downstream 362497 21369531 ~ 21372509 (-) True dnajb9a
XM_039809744.1 mRNA downstream 366030 21355580 ~ 21368976 (-) False dnm1l
XM_039809867.1 mRNA upstream 26354 21765682 ~ 21793881 (-) False prickle1a
XM_039809868.1 mRNA upstream 26354 21765682 ~ 21793881 (-) True prickle1a
XM_039809869.1 mRNA upstream 26354 21765682 ~ 21778750 (-) False prickle1a
XM_039807628.1 mRNA upstream 135645 21874973 ~ 21961067 (-) True LOC120563465
XM_039807634.1 mRNA upstream 274583 22013911 ~ 22029073 (-) True twf1a
TU117396 other downstream 21452 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 855368 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 906403 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 1475747 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 2052089 19682846 ~ 19682917 (-) True trnap-agg_7
XR_005639990.1 other upstream 949833 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 951720 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 1755002 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1999654 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 2165774 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile