RNA id: TU117746


Basic Information

Item Value
RNA id TU117746
length 517
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G87400
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22761185 ~ 22837866 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTcaatgaaaaacacagacaagaGACGTGATTCTGTCAATGTCATCAGGAAGAACAGTCAGCATGGCTGAAAGAGTGAGATCAGGAGGTTTTGGTGCAAAAAAAactcatcacataccctttatTGCAAAACTGTTGAATTTTTTTGTATCACCAATGGTGATTCACCATCAAGAGCCCCGACAGAGCAGCACTGTTCAAgtaaggagggaggggagaggtgACAGCTGTGTAAAAAAATctttcaataataataattaataataatgacaaaagaaataaaaacatctcTAAAAGACAAACACAATCACCTCAGTATAAGACGAGATTCTGTCACGGTCACAACAACCAGAGagaagttgttttcttttttttaatgaattaaatagtttttaaaaatatcTCACAATTTACTTATActcatctttttttcatttattgcgaaaAATAGGCAACTGGACTAATTGTGAtgatgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639987.1 lncRNA downstream 78909 22577017 ~ 22682276 (-) True LOC120563633
TU117635 lncRNA downstream 370969 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 394207 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 405989 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 654930 22105880 ~ 22106255 (-) True G87254
TU117838 lncRNA upstream 311284 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 360737 23198572 ~ 23217138 (-) False LOC120563856
TU117844 lncRNA upstream 360753 23198588 ~ 23224641 (-) True LOC120563856
TU117845 lncRNA upstream 393403 23231238 ~ 23238532 (-) True G87469
TU117898 lncRNA upstream 577928 23415763 ~ 23417853 (-) False LOC120564579
XM_039809502.1 mRNA downstream 3195 22746489 ~ 22757990 (-) False pus7
XM_039809500.1 mRNA downstream 3195 22746489 ~ 22757990 (-) True pus7
XM_039809501.1 mRNA downstream 3225 22746489 ~ 22757960 (-) False pus7
XM_039807603.1 mRNA downstream 21407 22736375 ~ 22739778 (-) True aplnr2
XM_039807958.1 mRNA downstream 26081 22726485 ~ 22735104 (-) True hdac10
XM_039808041.1 mRNA upstream 143 22837978 ~ 22843763 (-) True adck2
XM_039807735.1 mRNA upstream 96307 22934142 ~ 22943476 (-) True mrps35
XM_039809715.1 mRNA upstream 306422 23144257 ~ 23148303 (-) True cdkn1bb
XM_039807846.1 mRNA upstream 312884 23150719 ~ 23156968 (-) True yars2
XM_039807850.1 mRNA upstream 323315 23161150 ~ 23177303 (-) True pparab
XR_005639990.1 other downstream 54989 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 54989 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1021857 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 1021857 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 1047631 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 656495 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 901147 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1067267 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 1071334 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 1071334 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile