RNA id: TU118158


Basic Information

Item Value
RNA id TU118158
length 1282
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G87693
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 24042458 ~ 24043739 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATGTCAGATGTATTCATTATGCATTTGACTCTTCGTCGCCAATTTCAGGTGTTATGTAACTGttattgtttttactttaaacttttatctttttttttctccagtttgTTAAAGAGGTATTTACAATACAAATCAGTCAAAACCAAAGCAGCAGAGACCGAGACATCCTGGCTTTTAATCCCAAGTATAGGTCAAAAACCCCCAAAACCTGAAtacctacatttcccataatgcaactccaTAGCGTCTTACGTTAGAGCCCCTCTGCCCGGTAAATGGCCGTGTCTTTCAAACTCCACACCCCCAGCTTCTGAAAAAGAAATTTCAAGCCCAATAaccaatcagttttttttttttttttttaaatgatgacatcatcatggTCATTGCTTCAGACTTCTCAGAGCTCCTCCAGAACCACAGAGGAACATTACACAACCGGCTGAGACGAGTTAACACAACTCCATGTGTAAAATGGGTGGAGTGGTCCTCTAAGCCAGTAGcattgattttttcccccaacatAAACAGCTGGCTATCAGCACAAGCAGACGTCCAATAAATTGGCGTTATATTTGATCAGACTCCTGGCAGATTGTGGGCCAGGGGTTGTGAAGTAGTTCATTGCTAGTAAGAAAACTTTAAATTGAGGATTTCTGCAGCGTACTGGGACGGCATAATAAAACATCCGGCTGGCTGTTTGACAAGCAGGAAACTTGTGGAGGACGCGTTGTTTTCAATCAAGGAACAGCGGGTATTACCACCCTAGCATAGACACATCTGATATAGCAGTCACAAAATCTCATTGACTTGTAGTAGAGTAACACTGTTtttgaatgaaataaaaaaaaaaaatgataataaaaaaaaaaaagctgtttggcTGACCTTTACAATATATTTTCCTCCTGGTTGCTGCTGGTAAGAAATGAGATCATTTTCTCTTCATTTTCCCCACAGAGCATATATTGATTTTGGGGCTTCTCTCCCAGAACATCTTCATCAGGGTAACGCTCTCCCTTTCTATCGTGGGCGCCATACATTGAAAAACAAACGCCATGCTTTATTTTTCATCTATAACCGTGTGTACTACTACACTGCTACGCAAGTTGAATAAAAGCCGTTGGATGTAAAGGCCAGAATTGTGACAGTGATTGAGTGATGAAGAGATCTTGTATCacattttgtatgtttgttttatatccttttttatttaactgaCAATGGATGTTAATGTTGTGGAAATCAGTTTCAtgctggaataaaaaaaaaaaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118160 lncRNA downstream 2557 24037884 ~ 24039901 (-) True G87695
TU118056 lncRNA downstream 304953 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 412173 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 624605 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 803926 23231238 ~ 23238532 (-) True G87469
TU118202 lncRNA upstream 315254 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 540619 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 549622 24593361 ~ 24593577 (-) True G87755
TU118227 lncRNA upstream 561720 24605459 ~ 24605825 (-) True G87758
XR_005640114.1 lncRNA upstream 562158 24605897 ~ 24606556 (-) True LOC120564545
XM_039809023.1 mRNA downstream 26318 24008436 ~ 24016140 (-) True unc45a
XM_039809025.1 mRNA downstream 34103 24005568 ~ 24008355 (-) False LOC120564204
XM_039809024.1 mRNA downstream 34103 24005568 ~ 24008355 (-) True LOC120564204
XM_039807510.1 mRNA downstream 53927 23986366 ~ 23988531 (-) True gdpgp1
XM_039809882.1 mRNA downstream 68214 23964305 ~ 23974244 (-) True rhcgb
XM_039809219.1 mRNA upstream 390 24044129 ~ 24127735 (-) True furinb
XM_039807602.1 mRNA upstream 117838 24161577 ~ 24220343 (-) False rag2
XM_039807601.1 mRNA upstream 117838 24161577 ~ 24193177 (-) False rag2
XM_039807599.1 mRNA upstream 117838 24161577 ~ 24165040 (-) True rag2
XM_039807600.1 mRNA upstream 117838 24161577 ~ 24165017 (-) False rag2
XR_005640032.1 other downstream 126256 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 126256 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 126552 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 137285 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 301268 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 1021013 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 1552614 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 2630104 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 2969498 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 3180313 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile