RNA id: XR_005640114.1


Basic Information

Item Value
RNA id XR_005640114.1
length 462
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id LOC120564545
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 24605897 ~ 24606556 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTTCACGGCTGGGAAGGGCCCATGCTAAAACTTCTTGCACCACCTGCAGGTAGCGTGGGCGGAGATCTGCCTTAAAGGGTCCCCCAACTTCACTGACCTGAGGACCGCTGTGTCTGCTCATGTCAAGAACAACCTTCTGTCGGGCAGCAGAAGATGGTGGCCACCTTTATGTGCCACAACATGGCCACCGCTGACTGCTTCTACGCCCTCAGCCTGAACGTGGCCCAGTCAAAGAGGATGACGGAGCATTTCCGCTAGGCCCTCACCCACACCGTGCCATCACCGGAGTAACCagaagcctcctcctcctcccccaccaGGAAGAGTTACCGCAAGCCTGAGTCCTCCTCCAGTTCCAAGACAAAACCCCTGCCACCTACCAGGAGTCAGGGACCTCAGGactggagaaggagagggagtttATGGCGAGGCTGCAAAATACACCAGAGAAGGCCCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118227 lncRNA downstream 72 24605459 ~ 24605825 (-) True G87758
TU118224 lncRNA downstream 12320 24593361 ~ 24593577 (-) True G87755
TU118217 lncRNA downstream 21289 24584358 ~ 24584608 (-) True G87748
TU118202 lncRNA downstream 246613 24358993 ~ 24359284 (-) True G87733
TU118158 lncRNA downstream 562158 24042458 ~ 24043739 (-) True G87693
TU118229 lncRNA upstream 2878 24609434 ~ 24609684 (-) True G87760
TU118231 lncRNA upstream 4869 24611425 ~ 24611772 (-) True G87762
TU118234 lncRNA upstream 32449 24639005 ~ 24639753 (-) True G87765
TU118236 lncRNA upstream 33301 24639857 ~ 24640725 (-) True G87767
XR_005639948.1 lncRNA upstream 70040 24676596 ~ 24681736 (-) True LOC120563413
XM_039808218.1 mRNA downstream 217648 24383761 ~ 24388249 (-) True LOC120563810
XM_039807602.1 mRNA downstream 385554 24161577 ~ 24220343 (-) False rag2
XM_039809943.1 mRNA upstream 158860 24765416 ~ 24894803 (-) False LOC120564736
XM_039809945.1 mRNA upstream 158860 24765416 ~ 24892599 (-) False LOC120564736
XM_039809944.1 mRNA upstream 158860 24765416 ~ 24818459 (-) True LOC120564736
XM_039808847.1 mRNA upstream 655685 25262241 ~ 25278700 (-) True slc1a2b
XM_039808846.1 mRNA upstream 655685 25262241 ~ 25278473 (-) False slc1a2b
XR_005640032.1 other downstream 689695 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 689695 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 689991 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 700724 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 864707 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 458196 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 989797 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 2067287 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 2406681 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 2617496 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile