RNA id: TU118600


Basic Information

Item Value
RNA id TU118600
length 2447
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G88054
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26299574 ~ 26302020 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgattaatattctaagtgtctgacaacattatggaaaggatcccttcagagatagacctttaaaacctctttctGTTCAAACAGAAACAGCTCTGTAgccgctagcgctaaacccaccagactccatttaaaaaaagcaatacttttagcgtgtatagagccaacatattttcacatgtaaaactatgtgtttatttcaaccaaaactagagttgtaaTGGTTGGGAAAGTGGGAAAACGAcccaaaacagcttttcatagttttattttgtttctgtttacgATGCTaacattactgtttatttacatggagtctggtgggtttggcgaacgcaatttcgccaatgtttttatgtttaaaaaaaggatcttactctttaaaagGAAGGTCGACCTCCtaagaaatcctttccataatgttgtcagacacttagaatattaatctgaaccTGTCAGTGGCAATACGAGCAattttgtgaaggtaaaaaaAGGTGAAGGTAAAAAGCTGGACAATTTCcctgttaacttacattgtagctttatttcaaccaaaactttattgttggttgaaataaacacagtttaacgattgacatgtgaaaatatgttggctctatacacacacaagtaTTGCTTTTTCAAATGGAGTCTGATGGGTTTAGCGCTAacaacttcagagctgtttctgtttGAACagaaagaggttttaaaggcttatctctgaagggatcctttccataatgttgtcagacacttagaatattaatcagagcctgtcagtggcaaaacaagcacttttgttaAGGTAaaaacaagctggacaattgccctattaacttgcattgtagcttgtttagccgctgccgactgcagcgatcttgcttaacactggaccaatgtcaaagattgctgttgccatcagtcacttagacacaacaacataggaaaatgtttttgtgggtccaggttggaaaaaaaacgctagttaccctttaagaggGGTTTTgtgctggactatttcttgggTACTAGCATTGACTTGATTTTCtagtttttatgctaagctaactgtctcctGGTTGTAGACTTCCATTTACCATACAGATACAAGAGTGGTATTAATCTTCTCATCTGAAGCCGTTTTCTCATAGGAACATTTTGGACAATGTCCAGAGAATCAATTCTAGGACAATGTCCACTCGCTCGCTGTAAATTCTCCACACAATGAGCTGCTCTATTTACACATGGACTTTGTACCGGGGAGTTGGCAGGGTAAAGACGGTTTAACGTTCTGATCCAACACcaagtgcatgtgtgaaaaggACTTAAGTCTCGGCAAGAAGGCGACTAagcgcatttcccaaaatgtcaaaatacatGAATATGACGCTCTCATATGTAACACATCTTTCTATTGTAGTCATCTTGGATTGTTTtagaaatagatttttttttaaagtcacaggAGGTGCAGTCACCACTTGACATGAACACTAATGAGTAATTATCTAgctcttttgtcattttgtcatAATCACATCCACATCCATTGCTTGCTTTAGTTGAGCAGTATAACTTatgtaagatgttttttttttatttggtttcaACCCTGACTAGATGCTTTACGATAATTATATGTAAATTAGAtaactgatttattttttggctTATATTGCAAAACTGGCCCATGGAGAAATTTAACCCCCTATGCACCATGATGCATTGCTCTATGTGGCTATTTAGCTGGCTTTTCTTTATTGATTTGTTCTTCACAAGACAATCTTAACTGGCCAGCAGTGATGATACAGACTCTGAAACCTTATCACTTTTAGTGAATGCTTTACCACTAAATTGATTGTGTTTACTGTATCAACTCAAAGACTCCGGTCTGCTCAAGCTTATCAAATCACCAAATGTCTTAGTGCAACGCAGCATGTTGTAAACACATTGACGTCTTAATCTCTCCCAGAGCTGAATGTACAATGGACAAACTGTGATTTTCCAACCGAGCCCTTCGTGCGAGGAGCTTTTCTAGTTCCCTTTCTAATGCTTTTGTGGAATGCTGTGGTATGTTCACGTATAAGTTGCAGGAAAAGCTTTGATGTGTTATTCCTTCCCTCTACAGAACTAAGCAAATCATGTGCTTTAATATGCCACTCTTAAATCTGGACAACACAAGTGTCTGGATTATTGCAGTATCAGCAATGTACATATTTACGATGACTGTGCCATTACAAGTGTTTTTCTCTTCTATAAATCAGAGAACTTAGAATGACAAAGTTGCAATAAAGTTTACATTTTCTTACTTCACTTTTGAGTAATTTAGTTGACGCTTATTTTAAGACATCTCCATTTCATGTATTAACAGTGAACCCGGTGGGGCAGCAGGGTGGACGAGTAAGTAGGGAGACCAATTTTCAAGTGGAGAAGgcaagctctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118587 lncRNA downstream 14137 26280458 ~ 26285437 (-) True G88042
TU118570 lncRNA downstream 55954 26242641 ~ 26243620 (-) True G88030
TU118579 lncRNA downstream 65067 26234037 ~ 26234507 (-) True G88035
TU118573 lncRNA downstream 68254 26229603 ~ 26231320 (-) True G88032
TU118622 lncRNA upstream 92304 26394324 ~ 26394952 (-) True G88067
TU118655 lncRNA upstream 176722 26478742 ~ 26564586 (-) True G88096
TU118660 lncRNA upstream 235888 26537908 ~ 26542012 (-) True G88101
TU118668 lncRNA upstream 245754 26547774 ~ 26549686 (-) True G88106
TU118738 lncRNA upstream 468390 26770410 ~ 26771392 (-) True G88163
XM_039809327.1 mRNA downstream 32556 26243947 ~ 26267018 (-) True si:dkeyp-19e1.3
XM_039809326.1 mRNA downstream 36990 26243946 ~ 26262584 (-) False si:dkeyp-19e1.3
XM_039807654.1 mRNA downstream 72777 26209845 ~ 26226797 (-) True tmem86a
XM_039807651.1 mRNA downstream 109568 26032415 ~ 26190006 (-) True b4galnt4a
XM_039807572.1 mRNA upstream 1346 26303366 ~ 26327374 (-) True si:ch211-236l14.4
XM_039809058.1 mRNA upstream 193162 26495182 ~ 26503238 (-) True igf2b
XM_039807445.1 mRNA upstream 203080 26505100 ~ 26512528 (-) True th
XM_039808813.1 mRNA upstream 285130 26587150 ~ 26652111 (-) False osbpl5
XM_039808809.1 mRNA upstream 285130 26587150 ~ 26652111 (-) False osbpl5
TU118402 other downstream 702813 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1234086 25064752 ~ 25065488 (-) True G87803
XR_005640032.1 other downstream 2383372 23909169 ~ 23916202 (-) False LOC120563922
TU118702 other upstream 371823 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 711217 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 922032 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 1052952 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 4420088 30722108 ~ 30722503 (-) True G89085

Expression Profile