RNA id: XM_039809277.1


Basic Information

Item Value
RNA id XM_039809277.1
length 9141
RNA type mRNA
GC content 0.44
exon number 38
gene id ptprjb.1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26653636 ~ 26692244 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTtaacagagagaagagaaagttCTGACTTTTACATCTCCTCATGTAGCGATTGTGGAGAGTCTTTTCAAGCGACAAAGAAAGTTCGGACATGAAAGTTCTGAACTGAAAAGTCCCTGGAATCTGTTTTTCCCAAAGCGTGCGGCATGATGAAGCCACTGCTGCGGTGTAGCGTCTCTCTGTGGTCTATCCTGGTCTTCAGCGCTCTCctcaagATCTCCCAAGCACAATGTCCCGGTATTAAATGTAGCAGCAATGAAACGGAAACATTTACAACGACGACAACAACAGTCACGTTTGGATCCAGAAACAATTGCACCCTCTCcatcatcaatcaatcaatctcaaTCCCTGAAAATGGTTCGACAACTGGTTTGATTCCTGGAGCAGTCTATCAAATCTCTAGTagttgtttgaactgctgtACAGAGGCCACCACAAagCCTGGAGTGGTCAGGAACCTCACTGTCACTAATATCACAACATCCTCTATATTTCTGACGTGGACTAAACCAGATGGAAACAGCTCCTCCTATAGAGTACAGTGGACCGGTGGAAATGTAACTTACAATGACAGTGTGACTCtaacacagaaaaacattaCTAACCTGACTGCTGGTGTCCAGTACAACATTATTGTTACTGCAGTGGCAGATGATGGCATTACTGAAGGAGAGAAAGCCAGTGTTTCTCAGTACACAAAGCCTAACGTTGTCAGGAACCTCAGTGTCTCTAATATCACAACATCCTCTATATCTCTGACGTGGACTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAATGGACAGATGGAACAAATAACTGGAGTGATTATGTTACTGACACGGACATAAGTGTCACTGGGCTGACTGCTGGGGTGCAGTACAATTTGACTGTCCTTGCAGTGGCTGGAGATAACACAACTTTAGGAGACGCAATGACAATGTCACTGTATACAAAGCCTAACGTTGTCAGGAACCTCAATGTCAGTAATATCACAACATCCTCTATATTTCTGACGTGGACTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAATGGACAGATGGAACAAATAACTGGAGTGATTATGTTACTGACACGGACATAAGTGTCACTGGGTTGACTGCTGGGGTGCAGTACAATTTGACTGTCCTTGCAGTGGCTGGAGATAACACAACTTTAGGAGACGCAAAGACACTGTCACTGTATACAAAGCCTAACGTTGTCAGGAACCTCAGTGTCAGTAATATCACAACATCCTCTATATTTCTGACGTGGACTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAATGGACAGATGGAACAAATAACTGGAGTGATTATGTTACTGACACGGACATAAGTGTCACTGGGTTGACTGCTGGGGTGCAGTACAATTTGACTGTCCTTGCAGTGGCTGGAGATAACACAACTTTAGGAGACGCAAAGACACTGTCACTGTATACAAAGCCTAACGTTGTCAGGAACCTCAGTGTCACTAATATCACAACATCCTCTATATTTCTAACGTGGACTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAGTGGACAGATGGAACAAATAACTGGAGTGATTATGTTACTGACACAAACATAAGTGTTACTGGGCTGACTGCTGGGGTGCAGTACAATTTGACGGTCCTTGCAGTGGCTGGAGATAACACAACTTTAGGAGATGCAAAGACAATGTCACTGTATACAAAGCCTAACGTTGTCAGGAACCTCAATGTCTCTAATATCACAACATCCTCTATATCTCTGACGTGGACTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAATGGACAGATGGAACAAATAACTGGAGTGATTATGTTACTGACACAAACATAAGTGTCACTGGGTTGACTGCTGGGGTGCAGTACAATTTGACTGTCCTTGCAGTGGCTGGAGATAACACAACTTTAGGAGAGGCAATGACAATGTCACTGTATACAAAGCCTAACGTTGTCAGGAACCTCAATGTCACTAATATCACAACATCCTCTATATTTCTGACGTGGACTATACCAGAGGGAAACAGCTCCTCCTATAGAGTACAGTGGACCGGTGGAAATGTAACTGACAATGAGAGTGTGACTCTAACACAGCAAAACATTACTAACCTGACTGCTGGTGTCCAGTACAACATAGTTGTCACTGCAGTGGCAGGTGATGGCAGTACTGAAGGACAGAGGATAGCAATTTTTCAATACACAAGACCTGGTAAAATTGGGGAACTTACTGTGTCCACAAAcacttcctccatctctctgaaCTGGACCTCACCTCCTGGTGCGGTGTTCACGTACAAGGTGAAGTGGCATAATGATGTAGCGTGGATGAGCAGATACACAAACAGTACCTTTGCCGTACTATCAGACCTGATCCCTGGCACCAACTACATAATCTCAATCGTTGCCATCGCCGGAGACAATCACACAGAAGGAGAATGTAGCACATTCTCCTCAGTCACAAAGCCTGAAGTGGTGAGGAACCTCACTGTCACTAATATCACAACATCCTCTATATTTCTGACGTGGGCTAAACCAGAGGGAAACAGCTCCTCCTATAGAGTACAATGGACCGGTGGAAATGTAACTGACAATGACAGTGTGCCTCtaacacagaaaaacattaTTAACCTGACTGCTGGTGTCCAGTATAAAATTACTGTTACTGCAGTGGCAGGTGATGGCAGTACTGTTGGACAGAGTACATCTGTTTCTCAATACACAAGGCCTGAAAAGCCTGTGAACATCACGATTACAGCAAAAGGAACCTATTACCTGAACATCAGCTGGACTTTGCCTGCAGGGACAGTCGATGACTATGTTGTGAACATTTCAAATGAGAGACATACTTTGTATAGCAATATAACAGCAGTCACTACAGCCCTCTTTACTGATTTATATCCTGGGAGAATCTTTTTTATCACAGTGACCGCTGTTGCTGGAAACTTTAGTGAGATGTCTGACCAGTTTGCATTTGCCACTGATCCCACACCACCTGGCTCCATCATCTTCAGTCAGAGGACAAACTCTTCGCTCTCTCTGAAGTGGGCGACTCCTGCTTTAATGGAGTATGCTCCAAACATCAGTTACTATATCACCTACCAGCCTGCAAATGGAACAGTACATAATATAAGCTCCTTGGTCAATAGCACAGCGCTGAACTGGCTTTTGTCTGGAACTTCCTACAATATAACTGTACAAACAGTTGGACCCATGAATTTATGGAGCACAGTTGTCTATAATTCTACTTACACTTTACCCAACCCTGTGTTGAACCTTGTAGCCAGCCCTAGTTCCACCACCTCAGTAAAAGTGACCTGGTCATACCCGCAGGGAGCCCAGATGTATTACAAATACTTGGTTCAAACCTACAGTACTGCAGGACCAGTGTTTAACACACCAGTCAGCATTAACAACACTAATGTACCCAACCTGGAGCCGGGAACTGGATACAATATCAGTGTTACGACGATAGCAGCAACAGGAAGTGAATCCACGGTGGAAAACACATTCAGTTACACAATGCCCAAAGCAGTGACCAACCTCACAGTGGCGAATGTCAACACCATGGCGATCCAGCTGACGTGGCTCAGACAAAGTGATCATAAGCCTTCCTACACCTACCTGGTGATGGCGCTCCAGAACGCCACGGTGGTTCAGAATGATACAACTGAGACTGAGACTTATACCTTCTTCAATCTGACCCCTGGAACATTTTACTCTTTTGAAGTGTTTACAGTTGTAGAAGGCGTTATGTCCGCAGTGGAAAACACATCAAGTTACACAAagCCTGCTGCCGTTACTAACATCATAGCCATAGGAAGCACAACAACCATGTTAGTGAGCTGGACACCAGCATTTGGGCAGGTGGACTCCTACACTGTCTACCTGTTCAGAGGCTCGGTGCAGTTGGTGAAAAACAGCATGAATCCGAGCAACACTACTGTTACGCTTCAGGGCCTGACACCAGGAGTCGTTTACTGTACAGTAGTGGTCACAAAAAGTGGACCTTTTGAGAATAACAACTCTGTTTGCAACGCAACTTTTCCCAACCCTCCTGGACCCATCATGGTGACGTCTCAGACTGTGGAGTCCATCAACTTCACCTGGCCCTTTCCAAATGGCATGGATTCCCATCAGTACAACTTCAGCGTGTCCAGCATTAATGGCTCCTTAATTAGTGGAAACAACTGGTTCCTGCTGGACAACCTCCAGTCTGGAAGCCTCTACAGAATCTCTGTTGTTACTGAAGGCGTGTTGAACTATCGGAGCACTGCAGTGACAACAGAAAACTATACCAGACCATATCCTGTAACCAATCTGACAACGACAAACATCACCACAAATGCAGTGACCTTGGTGTGGGATCAGCCAGAGAGCAAACCTAACTACTTATATTTAGTGCAGACCACCAACAGCTACATTTTTCCATCTGTGGTAGACTCAAAAAAAATAACGATCTCTGGACTTCTCTCTGGGAGCAACtacagcttcaccgtcaccacacAGACACCAGATGGCACTAAGGCAGATCCTGTGCCAGTGTCTTACTTTACAcGTCCATATGGAATTGGACAGTTGGAAGCTGAAACCTTAAACACAACTGCTGTAAGTCTGAATTGGACGAAACCGCTGGAGTACAAGCCTGAATACACCTATTGGGTTAGGACTATAGGCTGTGGGTCCCAAAACCAAACCGTCCTAGGAGAAGTCGCAGTGATCTCAGAGCTTCCCCCTGGGACCAACTGCaccttctgtgtttttgtcagaGCAGCAAATGGCATCAAAGGGGAAGCAAACTGCACCTCCCAGTACACTAAGCCTGAGGCAGTGCAACCCCGTATCTCCAGCCAGGGCTCCAGTAGTTCAATCCTGGTGTCGTGGACCACACCTCCTGGGAAAGTGGAGCGTTATATGGTTTCCCTAAACAGCAGTTCCTTTTCCCTGAACTCCACCAGTACCTCCTTTCTGTTTGGCAACTTGTCTGCTGGAAGGCTTTACACTGCCATGGTAACCACATATAGTGGACCCTTCAGTGCATCATCTGGATTCATTACTAATGCAACCTTCCCTAACCCTCCAGGGCCGATTGAGATCCTGTCGCAGACAACCAGCTCCATTGATGTCAGGTGGAAGGAAGCACCGCTGATGGACGGTGCATCCTTCTACTACCAGTTGACTAAACTACCAGCCCAGGGAGGAGAAAACATCACTACCAGTAACACCAGTTATACCAGTTATACTTTTGGTtccctgctttctggaacgccTTACAACTTCTCTGTTGCAACAGTGGGTGCGATGGGTTTTCAGAGTGAGAGCGTTCAGATCTACATGGTCACTACAAGACCGTTCTGTGTGAAGATTCTTACGACTTCTACAAAAGAGGAGAGCATCACAGTCATGTGGAACGAACCCGACGAATACAAGGAAAGTTATCGTTACCATCTGACCTGGCGAGGCTCAGATGGGACTATTAGTAATATAACAATTAAAGAAATATATTATACCGTCAATAATCTAGTTCCTGGCAGCAGCTATGACTTTAATGTGACCACAGTGACCTCCGATGGAACCGAAAGTGCTCCAAGACGGATTTCCATCTGCACAAATGCAAGCCCGGTGACAAACCTTACATGTTTAGGGCCAAACACAACAAATGCAGAAATCCTCCTGTCCTGGACCAAACCCAATGGCCAAAATTTGGGCTTCCAGGTCACTGGAAACAACATCGTGAACAACGTAATAAAAACCTGCTGCAACTATACTGTGTCCAACCTTCGTCACTATACTGGATACAATCTGACAGTGGTGACTCAGAGCTGTGGATTACCTAGCACTCCTAGGTCTCTTCTCTGCATAACAGGCATCACAAatccACTCATTCCAGTGAACTATAAGTCACTGGTGGTGGTGACCTCCACGGCATACAACAAGTTCACCCTTCAGATTGACCCCAACCTGCTGGATAGCACCAGTGGGCCAATCACACAAGTTGGGGTGCTGGTGACAAACAACTTTTCTGGTAACTCTTCTGATTCGTTAGCGTACGTGGGGGCAACTTATGATCAGTGGAAGGCACGGAAAACTCTAGGATACATGGCAACAGTCAGCAATAGGATACAGGCAATCCAAACGCGCAGCGTAGAGAGCTATCTGATCATAGAAGTTGGAGATGAATCCACATGGAACGGCTACACTAACGGTGCTCTGGACGCTACTGGACATTACCAATTTGCTATTGTGTTGTTCACCAAACTGACTCTCGACCAAAACAACCTTGTGAATGTTCAACTGTCACTGCTGTCACCAACAAAATTCTACAATACTATTACACTCCCACAGAACCCAGCCGTAGTCACTGGCATTGCTGTTGGAGCAACATTGGGAATTTTTTGCATTCTCTTCATCATCCTCATCGTCTTCATTATCCACTGGAAAAGGATATCCACAAAAGAATCGCCCGACATCCAGATACATTCAATGAGAGCCAAAGTAAGTGTGGCTGTGAGGGTGGAGGACTACGAAGCTTACTACAAGAAGCAGAAAGCAGACTCCAACTGTGGCTTTGCTGAAGAATTTGAAGACCTGAAGCTTGTTGGTACAGCTCAGTCGAAAACGCACGCTCTGATGTTGGAGAACAAGCCCAAGAACCGCTACAACAACGTGCTTCCCTATGACTCCTCTAGGGTGAAACTCTCTATTATCCATGGGAGTCCATATGATGACTACATCAATGCTAACTACATGCCGggtTACGACTCCAGGAAGGAGTATATCGCAGCTCAGGGTCCTTTGCCCAGCACAGTCAACGAGTTCTGGAGGATGATCTGGGAGAAGAACGTACAGACTCTGGTCATGCTGACACGCTGTAATGAACAGGGACGAgtaaaATGCGAGCAATACTGGGATCATGGCACCAAGCACTTTGAAAACATCACTGTAACAACAACCTCTGTCATACCACTTGAAGACTGGACCATCAGGGActttaacataaaaaatGTGAAAACAGCAGAGACCCGTTCAGTGCGTCACTTCCACTTCACAGCCTGGCCAGATCACGGTGTACCACAAACCACCGAGCTCCTCATCAGCTTCAGACACTTGGTCAGAGAGCACATGGACCAATACTCCAGACACTCTCCTACTGTGGTCCACTGCAGTGCTGGTGTTGGACGCACAGGCACCTTCATAGCCATTGACCGTTTGATCTTCCAGATCGAAAGGGAAAATATTGTGGACGTGTACGGCATCGTCCACGATCAGCGCATGCACCGGCCCCTCATGGTGCAGACAGAGGACCAGTATGTGTTCTTAAACCAGTGTGCCATGGACATCATCAGATCAAGAACTGGAACCAACGTGGATCTAATCTACCAAAACACCGCTGCACTCTCTATTTACGAGAACatagaaccaaaaaaaaaagggtaccCCAATGCATAGGCCCGAGAAACCACTAaggtcttccacttctctctttACTCTTAATAAGAAACCAAGCAGACATTTGCAAAGGGAACGCAGATTgtgctaaaaaaaattatttttgacCTGTCATGCTTTTGTTAAGAATCTTGTAGCTTtatgggtgcctgggtagctcacctggtagagcaggagACCATATATAAAGGCTATCTCCTctacgcagcggccgcaggtttgactctgctgtgtggccctttgctgcatgtcattccccctctctctcccttatcatgtcttctgctgtcctatataagttaaggcctaaaatgccccaaaaaagaatTGTGTAGCTTTCTGGATGTAAACCTCTATTTTGTGGTATTTATTTGGTGAAAATGGTGAATGTTTGACAATAGAGGGAGCTATACTGTATGTGGAGATACAATAGGGGACATAATCACTTACCAAAGATATTTGGATTATATGTAAACTTTGGTCAATTATAAAATTGGATTCCCTCTTATAACTGCAGATTTTTGTattgttcagttttttttatgttgtgctTGTTTACTACTGTATTTGACTTACTGATGATTAAATATTTTGCTCAGGTATTACACTTTTGACAAAGAAAAACTTAACTTGTAATTAATTGAACCTTTGGTATTGCCTTGTACAATGATTTGCTAGTATAAATACTATGTGCCTTTTCAAAACGTGTATGCTTTAGTGCCAGTAGGTGGCACTCCATTATGTTTGTCTTTTAACTGACAAAAAGGGACTGTTGCTGTATGATATTACCTTGTTACAGGAACCATAAGATTACGTTTCTCAATACATCATATTTTAGTGATGTTTGTCAGATCATCAGGCCAATTCTATGTGCACCTTTTAAACCAATTTGAACTGTGCAATGCCTTTAAATGAAggagttttgtttttcattgtagagacttgtgtatgtgtatgctcTGTTGTGAATAATGCACTGGATGCATTTGTTTTTCTATACACTGTCCACTTTTTAATATATAGAGATCAGTACCGTTGATTACATTTTGGCCATGTGCTTTGTGAAACTGGATGGAACATTTTGCTATCCACCCTTCATTTGATTGTTACAATTTTACTTTGatcatttttcttcttcttttgattAAAGAGATGGATCACATAACACAACAACTCAGGAACTTAAACAATCAAAACAGAACATTTTGCTGGGGAGATATGGTGTTAGAAAATCCATACTGCACCACTGTGTACTCTGAAGTCACACCGATTGTGCTGGTTTTATACATGTCCTTCTCTACATTGTACATTCCTCAAAGAAACAACCATGTTATGCCACTTCCTGCAGCATATCTGGTTTATCTATGGACATTTCTTGTGATTTTAAAATCACCAGAGGAGCTCTTTTTCAGCTTCTAAAGGGCAGATTTTTCCATGAGGCAGGTACGTTTTTCCAGAtaattgatgtgtgtgtggttagccTGTAGATATAAAGATTCCATCTTTGTATTTTATCATAATGTACTTAATGATTCAAAGCACTTGATGAATAGTCACAAAGTTGTAGGATGTTTTTGAAATGCTTCATGTGATGTTTGCTGGTACAatgcaaataaatgtaaaaatagcAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118655 lncRNA downstream 89050 26478742 ~ 26564586 (-) True G88096
TU118668 lncRNA downstream 103950 26547774 ~ 26549686 (-) True G88106
TU118660 lncRNA downstream 111624 26537908 ~ 26542012 (-) True G88101
TU118622 lncRNA downstream 258684 26394324 ~ 26394952 (-) True G88067
TU118600 lncRNA downstream 351616 26299574 ~ 26302020 (-) True G88054
TU118738 lncRNA upstream 78166 26770410 ~ 26771392 (-) True G88163
TU118745 lncRNA upstream 101269 26793513 ~ 26793768 (-) True G88170
TU118804 lncRNA upstream 170534 26862778 ~ 26863804 (-) True G88209
XR_005639981.1 lncRNA upstream 308697 27000941 ~ 27001458 (-) True LOC120563588
TU118857 lncRNA upstream 310710 27002954 ~ 27003506 (-) False G88245
XM_039808813.1 mRNA downstream 1525 26587150 ~ 26652111 (-) False osbpl5
XM_039808809.1 mRNA downstream 1525 26587150 ~ 26652111 (-) False osbpl5
XM_039808808.1 mRNA downstream 1525 26587150 ~ 26652111 (-) False osbpl5
XM_039808810.1 mRNA downstream 1525 26587150 ~ 26652111 (-) True osbpl5
XM_039808811.1 mRNA downstream 37812 26587150 ~ 26615824 (-) False osbpl5
XM_039808227.1 mRNA upstream 172815 26865059 ~ 26868757 (-) True kcnj11
XM_039808220.1 mRNA upstream 176642 26868886 ~ 26938375 (-) False abcc8
XM_039808223.1 mRNA upstream 176642 26868886 ~ 26938374 (-) False abcc8
XM_039808222.1 mRNA upstream 176642 26868886 ~ 26938374 (-) False abcc8
XM_039808224.1 mRNA upstream 176642 26868886 ~ 26938373 (-) False abcc8
TU118402 other downstream 1056875 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1588148 25064752 ~ 25065488 (-) True G87803
XR_005640032.1 other downstream 2737434 23909169 ~ 23916202 (-) False LOC120563922
TU118864 other upstream 320993 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 531808 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 662728 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 4029864 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4550924 31243168 ~ 31250413 (-) True G89241

Expression Profile