RNA id: TU118971


Basic Information

Item Value
RNA id TU118971
length 1680
RNA type TUCP
GC content 0.43
exon number 6
gene id zgc:153031
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27223962 ~ 27229372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATAGTTGAGTTCAAGCCGCAATACGTTGTTcccgcacacagacagacgcgaAGTGTTGCAGATTTTGATCCTGCGCCTGTTTTACTTTGACGCAATAGTTTGATGGAAATGAGTCCGGACGGTCGGGACAAAGTGCAGAAGAAGCCTGTTCGCCTCATAGCAGCGGTCTGCAATGACATGGGGATCGGCAAAGACGGGAAACTGCCCTGGAATTTACCGTCTGAATTCCAGTACTTTCTGAACACTGTCAAAAGGGTGTCGAGACCAGgaaaGATGaacatgatggtctggggcaaACTGTGCTGGTACTCCCTCCCAAAATCTATGTTCCCAATGGCCAATATTCTGCATGTGGTGCTGAGCACGACACTGCAGTGAgtgctctctctcacacaaacacctgCATCAACAAGGGGAGCACGGTTCCAGATCACGCCCACTTCCTGTGTCAAGATTTTGAGAGTGCGGTCCGCCTGGCTGCACAGCCCCCCCTCGCTGACCTAATTGAGACCATCTGGATTGTTGGTGGGACGCAGGTCTACAAGGATGCGCTGAAGCACCCGTGGTGTGACTTGGTTTACCTGACAGACGTCATGGCAGACTTCGACTGTGACGTGTTCTTCCCTGAGTTTGACAGAGAACTCTTCAAAGAACAAGAAGGTTTTCCTGATGTACCGAGTGGAATTCAAGAGGAGAACGGCATTAAGTACAAGTTCCAAGTGTTCAAGAAAGAGATTGGTGATGCTGTGTAGACAGCTAAAAGAGAAAATCAATAGATTGCCAGAAAACACTCAAAATAACTCATTCCTCAAgttcaagttactttatttataCCCGAAGGTAGATTTTGTTTTCAGTAGagtcacacatcatcacattatCACACATCATCAAAAAAGTTCTTATCGGTCCAGAATAAGAtaatacataggcctacataaagaTCGTATGTAAGATACGAGTAAAAAGATTTAATAcgagtaaaaaaaagtaaaagatttAGTTTGCAGTAGACTcctcatacacacatataaaagcAAATGAGTAAAAGagtacatacataaaaaaaaataaaaaaaattccttACAACTTTTCAAGATGTATTGCCAAGTCAACTCCTGGatagactgtagagacatgctgCCAAACCCACAGTGCGTCACTATATTTCTATAAATTCACGGAAATCCACAGTCTTCTTAACACTCTTTGTAATATAGTTGAGTGTAAATATGACTTTTATACTCTTTGTAATCAATGAAAAACTTGAAACGCAGACACTTTAACAGCCGTCCAGTTTGTTTACAAAAGTCTTTGCACGTATCTTCCATCGCTGCTGCTTGGTCGGACATTACGATCTGTTCCGATATAAAAACTGCCACCCTCTGCTCACCTTGTCAGCGTTCCCATCTCGCCCTCCTCCTCAGTAACATTGCAGCTGCACAGAGAATATGCTTGTCGGCGAGTCAGTCAGCTGCTTACGTTGGCGACAGCCTGTGGTCACAGCAGATCTGGTCCTTTCTAAGCAAACATGACAGATGCCAGTTTAGAAAGCAACAAATGAATTGTCCTACTATGACTGTCTTGTCATTGAGAAAGATACGGGGAAATTTTAAAGCTTGTAATTTGTTGTGATTACAACTGAAAATACATGTATTTTGAAGGTTTTTactgtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118942 lncRNA downstream 53785 27169988 ~ 27170267 (-) True G88305
TU118902 lncRNA downstream 162916 27060552 ~ 27061136 (-) True G88274
TU118898 lncRNA downstream 167120 27055670 ~ 27056932 (-) True G88272
TU118856 lncRNA downstream 219867 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA downstream 219867 27003584 ~ 27004185 (-) False G88245
TU119051 lncRNA upstream 128113 27357079 ~ 27358179 (-) True G88380
TU119052 lncRNA upstream 130830 27359796 ~ 27362901 (-) True G88381
TU119063 lncRNA upstream 147893 27376859 ~ 27378018 (-) True G88391
TU119077 lncRNA upstream 191471 27420437 ~ 27424635 (-) True G88405
TU119112 lncRNA upstream 395024 27623990 ~ 27627071 (-) False LOC120564276
XM_039807389.1 mRNA downstream 21127 27190915 ~ 27202925 (-) False si:ch73-62b13.1
XM_039807387.1 mRNA downstream 26040 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039807388.1 mRNA downstream 26317 27190915 ~ 27197735 (-) False si:ch73-62b13.1
XM_039810046.1 mRNA downstream 80741 27135856 ~ 27143311 (-) True etfbkmt
XM_039808766.1 mRNA downstream 146219 27061216 ~ 27077833 (-) True washc4
XM_039809245.1 mRNA upstream 860 27229826 ~ 27240938 (-) True cry1b
XM_039809137.1 mRNA upstream 395134 27624100 ~ 27650062 (-) True LOC120564276
XM_039809138.1 mRNA upstream 426498 27655464 ~ 27669472 (-) True uri1
XM_039809512.1 mRNA upstream 444632 27673598 ~ 27675858 (-) True LOC120564488
XM_039809520.1 mRNA upstream 557706 27786672 ~ 27790974 (-) True ccdc113
TU118864 other downstream 209641 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 549169 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1627291 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 2158564 25064752 ~ 25065488 (-) True G87803
XR_005640031.1 other downstream 3307850 23909169 ~ 23916202 (-) False LOC120563922
TU119050 other upstream 126006 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3493142 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4014202 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4877657 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 5575708 32804674 ~ 32851458 (-) False fa2h

Expression Profile