RNA id: TU119051



Basic Information


Item Value
RNA id TU119051
length 1101
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G88380
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27357079 ~ 27358179 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCTTAAACGGCTGAGGAAGAGGATTTGAGCTTGGGATCCATTTCATCTTCTTGCGGGGCCGTTTGATGACCAGCGGCTCCCCAGCCATCTCTCCCACGCCAAGATCAGAGGGGTCCATGTGGGCATCAATTGTTTGTATCCCAGAGTCCCTCACAGTGGGTGTAGCATCATGATTGGACTGTGCAAGCGCAGCCAGCAGCTGCCTGACTACATTGTCATACATGAGGTCACTCTCATTGGTGATGAAGTCCAGCCGGTTGAGCGACTTGATGTGGTCCCTGTTCTCGTTGCAGAACATGGCCAGGATGTTGATGTCGCAGAACTGAGACTTCTGCCAGCGTCGCCGCGTTTTAATGCCAACTTTGTGTAGTTTGTCAAATACAAAGTTGGACTTGCGCACCACAAACAAGTGCAACAAATTAATCAGGATGATGAGGTTCATGGTGCAGAGCAGAGCGATATCTACTGCTGCCATGATGCGCTGCAGCTGCACAGCAGGCAGCTTACAGTTGACCCTGAGCTTCAGCTCTTGATAGCTGCTAGTGTCTGGTGGCTCACCCAGCGCACAGGTGAACTCATTCTGCCTCTGGCGGGCATAGTAGGCGCTCAGGTAGGAAATGGGGATGGAACTGAGGCAGACAATAGCCAGGTGGCGTCCCAGGTAAAGCTTAGCCAGAAAGTTACTTTGGCCTCGTCTCTCCAAATATTTCTCAAACAGGTTCTGCTCGGGGCTTTTCTCCTTCTCCGCGTTCTCTATGatctccctcctctctcgcTCAGTTATGCCAGGTCCTTTGGACTGGATCTGCTTCTCGATCTTTGGGGCTCTGCCCTCAGCGGCTCGATGATAGCAGTTGTCAATCTCTTGAAGCAGGAAATTGAGCTCTGAAGTGAGCCGTGTAGAGGCAAGGAACTCCCAGCCCAAAGCAGGAATGTACATGATTCCAGCGAAGGCCAGCAGGGCATAGGGCAGGAACTTGTGTTCAAATAGTGAAGGCCAAAGGTGAGACTCCAGACCAGGCGCAGCGTCCCGCAGCTCTGTCCAGCAGTAGCCTCTTGCATACAGTGCCTGATCTCTGGTGAAGTTGTGTGGTGTGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118942 lncRNA downstream 186812 27169988 ~ 27170267 (-) True G88305
TU118902 lncRNA downstream 295943 27060552 ~ 27061136 (-) True G88274
TU118898 lncRNA downstream 300147 27055670 ~ 27056932 (-) True G88272
TU118856 lncRNA downstream 352894 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA downstream 352894 27003584 ~ 27004185 (-) False G88245
TU119052 lncRNA upstream 1617 27359796 ~ 27362901 (-) True G88381
TU119063 lncRNA upstream 18680 27376859 ~ 27378018 (-) True G88391
TU119077 lncRNA upstream 62258 27420437 ~ 27424635 (-) True G88405
TU119112 lncRNA upstream 265811 27623990 ~ 27627071 (-) False LOC120564276
TU119158 lncRNA upstream 341441 27699620 ~ 27699935 (-) True G88467
XM_039809245.1 mRNA downstream 116141 27229826 ~ 27240938 (-) True cry1b
XM_039807473.1 mRNA downstream 127707 27223962 ~ 27229372 (-) True zgc:153031
XM_039807472.1 mRNA downstream 127711 27223964 ~ 27229368 (-) False zgc:153031
XM_039807389.1 mRNA downstream 154154 27190915 ~ 27202925 (-) False si:ch73-62b13.1
XM_039807387.1 mRNA downstream 159067 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039809137.1 mRNA upstream 265921 27624100 ~ 27650062 (-) True LOC120564276
XM_039809138.1 mRNA upstream 297285 27655464 ~ 27669472 (-) True uri1
XM_039809512.1 mRNA upstream 315419 27673598 ~ 27675858 (-) True LOC120564488
XM_039809520.1 mRNA upstream 428493 27786672 ~ 27790974 (-) True ccdc113
XM_039809516.1 mRNA upstream 440827 27799006 ~ 27811080 (-) False tbxas1
TU119050 other downstream 1303 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 128113 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 342668 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 682196 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1760318 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 3363929 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 3884989 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4748444 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 5446495 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 6866082 34224261 ~ 34225516 (-) True G89849

Expression Profile