RNA id: TU119063



Basic Information


Item Value
RNA id TU119063
length 825
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G88391
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27376859 ~ 27378018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCTAATCTTTGTATCACTACTTTGAAATGACATTAcacgtcatttagctgacgcttttatccaaagcgacgtACAATTGCTATACATGTCAAATGCCgcatgcctctggagcaactatgggttaagtgtcttgctcagggacacattgggaattgaacccagatctcccacaccaaaggcttgtgtcatatccactgcgccatcaccacccagtTGTGTTTTGTAACGTTTTGATTATATTTCCAACCTGGgtgcacaactaaaacacagcTGGGGTAAACATTCGGGCGTACGAAAGTGTTGAGTCCTGACCTCAGAGAAGTCTCCATTCTCAGCGGCCTCAATTGCATTCTGGGCGATGTAGTTCCTGAGCACCACACGAGGGTTGGCGCTGTCCATCACCGTCACCCTCTCCTCCTGCGCGGCCCGCGCGTCGCTCTGGCCTTCCATCTCCCGAGCCAGACGCTTCCTATAGCGTGTGATCCAGTGGCTCCACTCCTCCGCCTGTTGGGTTTTCAGCTCTTCCTGGCTGGTCTCCATCAGGTCTTTCAGTTTGCTGAGTCTCTCCAACTGCCTTGCAATTGTCGTCCGGTCAGAGATCATCTGGAACAGCGCTGGGTTACTCTGAGCCATAGAGAGCAGCATCGCCAGCTCACTGTCAACAgcagacagaaaacacacagtcatcatcttttttttggCATGTTGGATAAAGCAAACCAGTGCTGCCAGTGCAGGCAATCCAGCTTTTAACTGTTGTTATGTACGCTATGGGGAATCTGAGGTAACAAGATGAACTAAACAAAAACCTGACTAGTAGGTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119052 lncRNA downstream 13958 27359796 ~ 27362901 (-) True G88381
TU119051 lncRNA downstream 18680 27357079 ~ 27358179 (-) True G88380
TU118942 lncRNA downstream 206592 27169988 ~ 27170267 (-) True G88305
TU118902 lncRNA downstream 315723 27060552 ~ 27061136 (-) True G88274
TU118898 lncRNA downstream 319927 27055670 ~ 27056932 (-) True G88272
TU119077 lncRNA upstream 42419 27420437 ~ 27424635 (-) True G88405
TU119112 lncRNA upstream 245972 27623990 ~ 27627071 (-) False LOC120564276
TU119158 lncRNA upstream 321602 27699620 ~ 27699935 (-) True G88467
TU119188 lncRNA upstream 434353 27812371 ~ 27813288 (-) False LOC120564781
TU119235 lncRNA upstream 597163 27975181 ~ 27975661 (-) True G88510
XM_039809245.1 mRNA downstream 135921 27229826 ~ 27240938 (-) True cry1b
XM_039807473.1 mRNA downstream 147487 27223962 ~ 27229372 (-) True zgc:153031
XM_039807472.1 mRNA downstream 147491 27223964 ~ 27229368 (-) False zgc:153031
XM_039807387.1 mRNA downstream 178847 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039809137.1 mRNA upstream 246082 27624100 ~ 27650062 (-) True LOC120564276
XM_039809138.1 mRNA upstream 277446 27655464 ~ 27669472 (-) True uri1
XM_039809512.1 mRNA upstream 295580 27673598 ~ 27675858 (-) True LOC120564488
XM_039809520.1 mRNA upstream 408654 27786672 ~ 27790974 (-) True ccdc113
XM_039809516.1 mRNA upstream 420988 27799006 ~ 27811080 (-) False tbxas1
TU119050 other downstream 21083 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 147893 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 362448 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 701976 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1780098 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 3344090 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 3865150 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4728605 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 5426656 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 6846243 34224261 ~ 34225516 (-) True G89849

Expression Profile