RNA id: TU119112



Basic Information


Item Value
RNA id TU119112
length 647
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC120564276
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27623990 ~ 27650062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGTGATGTTGCCGtgttcccagatctcagcaattaCTTTGCTCGGAAGCCATTCCAGTGCAGGTACTGCCCCTACAGCGCCTCCCAGAAGGGCAACCTAAAGACCCACGTCCTCTGTGTCCACCGCAAGCCCTTTGACAACAGCCTCTACCCGGACCGACGCCTCCGACGCTCACACACGCCCCAGAGGCCCTCCAGATTGCCTCAGAGCTTCACGGGGGATAACCGCGCACCAGGAAGAGACCAGATTGGCATGACATCACTCTGTGGGACTTGACGTTGTCATGGCAACAGCAGATACAGACAGTTATGATTATTGTTTTAGCTTCACCTCGAAGAGGTTAGAATGATTGGATGAttgaaattgttaaaaaaaaaaaaaaaaaagttaacaacCAACCTTGATGTATAGTACATTCCAGTGTTTACTTGAAGAGCCACAGTACGTATATATCTGTAGCAAAGACGCtgcctataataataataataataataataataataataataataaagtccaTTGTGATGTGAAAGTGTAGCGAGGCTATTTAGTGCTGTTCATTTTGTCAAAAGTGTCCAAACGATTTACTTGTGTTTACATGCATCTATCAGTTCAACACTTGTCTGATAGGGAGAATGTACCGTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119077 lncRNA downstream 199355 27420437 ~ 27424635 (-) True G88405
TU119063 lncRNA downstream 245972 27376859 ~ 27378018 (-) True G88391
TU119052 lncRNA downstream 261089 27359796 ~ 27362901 (-) True G88381
TU119051 lncRNA downstream 265811 27357079 ~ 27358179 (-) True G88380
TU118942 lncRNA downstream 453723 27169988 ~ 27170267 (-) True G88305
TU119158 lncRNA upstream 72549 27699620 ~ 27699935 (-) True G88467
TU119188 lncRNA upstream 185300 27812371 ~ 27813288 (-) False LOC120564781
TU119235 lncRNA upstream 348110 27975181 ~ 27975661 (-) True G88510
TU119238 lncRNA upstream 348894 27975965 ~ 27982294 (-) True G88513
TU119349 lncRNA upstream 512215 28139286 ~ 28206127 (-) False tspan9a
XM_039809245.1 mRNA downstream 383052 27229826 ~ 27240938 (-) True cry1b
XM_039807473.1 mRNA downstream 394618 27223962 ~ 27229372 (-) True zgc:153031
XM_039807472.1 mRNA downstream 394622 27223964 ~ 27229368 (-) False zgc:153031
XM_039807387.1 mRNA downstream 425978 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039809138.1 mRNA upstream 28393 27655464 ~ 27669472 (-) True uri1
XM_039809512.1 mRNA upstream 46527 27673598 ~ 27675858 (-) True LOC120564488
XM_039809520.1 mRNA upstream 159601 27786672 ~ 27790974 (-) True ccdc113
XM_039809516.1 mRNA upstream 171935 27799006 ~ 27811080 (-) False tbxas1
XM_039809519.1 mRNA upstream 171935 27799006 ~ 27811019 (-) False tbxas1
TU119050 other downstream 268214 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 395024 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 609579 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 949107 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 2027229 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 3095037 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 3616097 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4479552 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 5177603 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 6597190 34224261 ~ 34225516 (-) True G89849

Expression Profile