RNA id: XM_039809137.1


Basic Information

Item Value
RNA id XM_039809137.1
length 3285
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120564276
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27623990 ~ 27650062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggctaccacagcagTATGCAGCACCaagcagtaccctctgagagaGAGGAAGCGTACAGTTCAATGGGGGGAATCTGGGTCCGTCTATGTGCTGGGCGTTTATGATAAAGCGTGTGAAGCGTACAGTCAGTCAGCAGTCAGTCATTCAGTTCCCCATCACTCTCCGCTGAACTCCGGCTGTCACCTCTCGAGTCCTCCGCGCCCCCGTCGCATCGGCCAGGACAGCTTCATTACCCTGTCCACCCACCCAATTAGGAGCCAGATGGCGCTTCTGGCCAATCAAATCATGGATGCAAGGATTCTCAGCAGTATGAACGGGAGAGCAGAGCTTTCCCAGTTCTTGAGAGTCACCAATCAGAGCATTGCCTCCCAGGTAAATTCCACCCAGGAACAGGACAGCCGCAAGAACAGGAAGTATCCCTGCCCGTTGTGTGGAAAGCGCTTCCGCTTCAACAGCATCCTTTCCCttcacatgcgcacacacactggCGAGAAGCCATTCAAGTGCCCATACTGCGACCACAGGGCTGCACAGAAGGGCAACCTGAAGATACACCTCCGTACTCACAAGCAAGGCATTCTGGGTAAAGGCCGTGGGCGAATTAGGGAGGAGAATAGATTGCTTCATGAGCTTGAGGAAAGGGCGATACTAAGGGACAGGCAGACGCGAGCTGGTCATGTTAGCCAACAGCAAACATCGATAATAAACCAACTTCAAAAGCCCCAACTGTTACAGACTGTCCCGATACAACCCCCATTCTTAACTAACTCTGGAGCTACAAAGAGCCAGCCACACGCATCCACATCCCCTAAGGTGACTCCCGTCCCTGATGATCCCATCCAGCCCCAACCCATCGGCTTCCGCTGCTCATTCTGTAAGGGAAAGTTCAGGAAGCAGCAGGAGCTTGAGCGCCACATCAGGATCCTGCACAAACCCTATAAATGCACCTTGTGCGAGTTTGCTGCCTcgcaggaggaggagctgaTCGGACACGTTGAGATGGCGCATATAACTGCTGATGCGGGCTTAGGGCAGAGGCCTGCGATGGGGGCCGGTGACAAGAAGAAGCCCGCTGGCGAATTCCCCTGCGAGGTGTGCGGCCAGACCTTCAGCCAGGCCTGGTTCCTGAAGGGTCACATGAGGAAACACAAGGACTCCTTTGAGCACTGCTGTCAAATCTGTGGCCGTCGTTTCAAAGAACCCTGGTTTCTCAAGAACCACATGAAGGTCCACCTCAATAAGCTGGCTGCTAAGCGTAATCTCCCTGCCGAGCATGACACCTGCGTTAACATGAACAACCTATCACAAGACCACCAGAGCACCCTCTACTCGCAGTACATCACCCGCATTCACAACAGGTTCCTCATGGCTGAGAGAGCCGACCATCAAGATTACAACCAGATACTTGCCACAGCAGGCGTTGACATGAAAGTTAGGGAGATGTTAGGGAGGATGATTTCCTCAGGCCCTTTGACAGATGCAGATTGTTCCTCTTTGCTGAGTTTAAATCATCTCCACCCTCCACTGAGCTCCACTAGCATGGAATATCTGCAGAAGATCACGTCAAACAGAGATacactcagcagcagcagcagctaccCAGGCTGGCAGATCATGACACCAGGGCTGCCTGTTGAACAGCAAATGTTCGGTCCTAAAGACCAGCAGCAGTGCTCCTCCTACCTGACTGAGACATGTGTCCCTGTAGACGATGGGAAAGTGTGTCTCGGCGACCCAGACACTAAGGCCATCAGCAGACCCGGTAGCCCAGGCAGCGCGAGTCATCCTGGGCCAGAGATGGGGAGCTCCCACTCTGGCAGTGGCCTCGACCATCGACCACAGTCTTCTTCTCCAGCTACAGGTGAGAAAGTCTACAGGTGTCCACTCTCCAGTGACTACACCGCTGCACAGGCTGCCTCCCTTGGCTTCCATCTGGATCGCTACCACTTCCCCCACTGGCAAACAAGCAGGGATCTTTCTTCTCCACTTCAgcccaccagcagcagcagctccagccccaaccccaaccccaagcTCAGACCTAGATCCAGGGAAGACTGGAGCCCAGCCCACTACCTTGGTCTGGAGAGCCACAGTGATAACGCCCTGCTCATCAACAACCAGTCGAGTGACAAAGATGCAGGTGTAGACGGCCCTCTGTCTGCTCAAACCAGGAAGTCCCAGTATGAGCCTTTAGATTTGTCTGTCAGGCCAGAGTCTGTCATGTCTCATTCAGGCATGTCTCCTGCTGTACTGGTACAGATGTCTGGAGTTTTTAGTAATAGACTCTCCTCCTCCATTACCCGCCGGCTACAAAGTTACTCTAATGCCGCAGCTGAGCTCGGTGTGAAACCTGCATATCAGCGTGACCTTTTGGTGCAGGGAACAAAAGAAGAGATAAACACACAGAATGCCAGCTCCACAGGTCACGACGGTGAAGGTGAATTTGAGAAACCCGAGCAAGGGAGGGAGGATGAAAATGATGATGCTGCCAAGTGGAAGATGCTGAAAAATAATATcctggagccagaggagctgggaAAGGCGGATTTCCAGAGTCCTGGCGAGAAGAAGCATGACAACCCGGGAACTTGGGGCAGAGCTGTGGCTGAATGTCCCGTCTCCTCTCTGGAGAACTTGGCTCCAGGACAGGCAGATCACCTCCAGCATCAGGGCGGCCTGCTCTCCTACCTCAGATCCCAGGGGAACCTGAGCAGCGCACCTGCCAGCGCACACAAAGCCAGTCTGAACGATGGGGGGAACATGGAGAAAGATGTCGCATCAGCTCGGAAGCCATTCCAGTGCAGGTACTGCCCCTACAGCGCCTCCCAGAAGGGCAACCTAAAGACCCACGTCCTCTGTGTCCACCGCAAGCCCTTTGACAACAGCCTCTACCCGGACCGACGCCTCCGACGCTCACACACGCCCCAGAGGCCCTCCAGATTGCCTCAGAGCTTCACGGGGGATAACCGCGCACCAGGAAGAGACCAGATTGGCATGACATCACTCTGTGGGACTTGACGTTGTCATGGCAACAGCAGATACAGACAGTTATGATTATTGTTTTAGCTTCACCTCGAAGAGGTTAGAATGATTGGATGAttgaaattgttaaaaaaaaaaaaaaaaaagttaacaacCAACCTTGATGTATAGTACATTCCAGTGTTTACTTGAAGAGCCACAGTACGTATATATCTGTAGCAAAGACGCtgcctataataataataataataataataataataataataataaagtccaTTGTGATGTGAAAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119077 lncRNA downstream 199465 27420437 ~ 27424635 (-) True G88405
TU119063 lncRNA downstream 246082 27376859 ~ 27378018 (-) True G88391
TU119052 lncRNA downstream 261199 27359796 ~ 27362901 (-) True G88381
TU119051 lncRNA downstream 265921 27357079 ~ 27358179 (-) True G88380
TU118942 lncRNA downstream 453833 27169988 ~ 27170267 (-) True G88305
TU119158 lncRNA upstream 49558 27699620 ~ 27699935 (-) True G88467
TU119188 lncRNA upstream 162309 27812371 ~ 27813288 (-) False LOC120564781
TU119235 lncRNA upstream 325119 27975181 ~ 27975661 (-) True G88510
TU119238 lncRNA upstream 325903 27975965 ~ 27982294 (-) True G88513
TU119349 lncRNA upstream 489224 28139286 ~ 28206127 (-) False tspan9a
XM_039809245.1 mRNA downstream 383162 27229826 ~ 27240938 (-) True cry1b
XM_039807473.1 mRNA downstream 394728 27223962 ~ 27229372 (-) True zgc:153031
XM_039807472.1 mRNA downstream 394732 27223964 ~ 27229368 (-) False zgc:153031
XM_039807389.1 mRNA downstream 421175 27190915 ~ 27202925 (-) False si:ch73-62b13.1
XM_039807387.1 mRNA downstream 426088 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039809138.1 mRNA upstream 5402 27655464 ~ 27669472 (-) True uri1
XM_039809512.1 mRNA upstream 23536 27673598 ~ 27675858 (-) True LOC120564488
XM_039809520.1 mRNA upstream 136610 27786672 ~ 27790974 (-) True ccdc113
XM_039809516.1 mRNA upstream 148944 27799006 ~ 27811080 (-) False tbxas1
XM_039809519.1 mRNA upstream 148944 27799006 ~ 27811019 (-) False tbxas1
TU119050 other downstream 268324 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 395134 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 609689 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 949217 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 2027339 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 3072046 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 3593106 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4456561 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 5154612 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 6574199 34224261 ~ 34225516 (-) True G89849

Expression Profile