RNA id: XM_039810034.1


Basic Information

Item Value
RNA id XM_039810034.1
length 5170
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120564781
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27812245 ~ 27824961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccacactttcactcgctgatacaacccaatctgaccggggatcagttacaaattaattccactctttcaatctcaactcGTTCTTAGAAAACTGATCTTGATTCAGTGCgatgtaaacaacctgctctatgcccacccacctttatctttagccaatctacacagtgcatgcggccttctcccaatcattacattaaacaacttttactttattctgattggataattatcaCCATAATGATTAATGCCCATTGTGTAATACGGGCTAGATCGCAGTTTGacaacaaggggtgctgccaccaacaaggggtgctgccgcaCCCTCAGCACCCCTACTTCCCGCGCCTATGCCCGTTGTTGTTGTGGCGCAGATGTTTCCTCCATGTAAAACTTTTGGTATGGACTCTGCTATGAATCCgtgtgaggacagagaggagggagtcCCTGCCTCTAAAACCACTCTGTGTGGGGAAGATGACAGCCACACCAAAGCTCAGGGAATGCATCAGCAGAGACCAGACTCTCCTGGACCTGGATTAGGATCTGGATCCAGCTGTGTGCCCCTAGATAGTGACAGGTCTATGGGTCGCTTTGAGGAGTTTAATAGATCACCTCCTGATGGAAGACTTCAGCAGCAGAGTTCAGAGGGTCTCGgtggtcagtctgcccagcagcatcaaacagacctggactccatatttatgctgttgGATGAGAACATTGTCACTTTCGTGAAGAACGAGCTGAAGAGAGTCCAGAGGGTTCTGAATCCATTTTACCCAGAATGCTTAGAGATTCAAAAGGAGGGTGAGGAGGTGTTGGACAAtgaagacagagagcagagaaggagcagcagagaggcatttctgaagatcgtactgcacttcctgaggagaatgaaACATGAGGAGCTGGCTGACTGTCTGCAGAGCAGGACTCATGCTACAGTGTGCCAACATGAACTCAAGTCTAATTTCAAGGAGAAGTTCCAGTGTATGTTCGAAAAAATTGCCGaagcaggaaacccaacccttGTGAATCAGATCTACACAGAGATTGACAGCCCagagggagggactgcagaggaCAAGGATGAACACGAGttcagacagattgaaacagcatccaggaaaGAAGACGGACAAGAACCAGCAATCAGACAAGAAGACATATTTAAATCCTcacctggaagagatgaaccaatcagaacagtgatgacaaagggCGTGGCTGGCattgggaaaacagtcttaacacagaagtttaCTCTAGACTGGGCTGAAggcaaagccaaccaggacatccagttcacatttccattcactttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgtccATCTCTTCTTTactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgaATGTAGgcttcctctggacttccacaacaatgagatcctgactgatgttacaaaGCCCGCCTCAgtggatgtgctgctgacaaacctcatcactgggaaactgcttccctctgctcgcctctggataaccacaagACCTGCAGTAGCCAATCGGATCCCTCCTAggtgtgttgacatggtgacagaggtgAGAGGGTTTACTGACCAACAGGAGGAGGAGTTCTTCAGGAAGAGATGCGGAAATGAGGAAcaggccagcagaatcatctcccataTCAAAACATCACaaagcctccacatcatgtgccacatcccagttTTCTGCTCCATcgctgctacagttctggatgATGAGTTGAAAACCAAAGAGGGGgaagagctgcccaagaccctgactgagatgtacatccgcttcctggtggttcagtccaaactgaagaacatcaagtacgatggaggagctgagacagATCCACACTGGAGTCCAGAGAGCAAGAAGATGATTTTGTCcctgggaaaactggcttttgaaCAGCTacagaaaggcaacctgatcttctacgAATCCGACTTGACAGAGTGTGGCATTGATATCAGCGAGGCCTCAGTGTACTCAGaagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgctttgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatCAACTCTGGTGTTAATCTGCTGTCAGAAGAACAAACAACCACCTGGTTTCAACTTATAAACACACCCAAACCAACACATCtctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggactttTTCCttcgcttcctcctgggtctttcacgAGAGCCCAATCAGACTCTCCTTCAAGGCCtgctgacacagacaggaagtagcgCACACATCTGTCAGGAAACAGCTGtgtacatcaagaagaagatcagtGAGAATTTGTCTGCTgagaaaagcatcaatctgttccactgtctggaTGAACTGAATGATAATTCTCTTGTGGAGGACATCCAGCAGTACCtgagttcaggaagtctctccacagataaattgtctcctgctcagtggtcagcccTGGTCTttatcttactgtcatcagaaaaaGATCTGGAGGTGTTTGACTTGAAGAAgtactctgcttcagaggaggctcttctaaggctgctgccagtggtcaaagcatCCACAAAAGCTCTactgagtggctgtaacctctcagagagaagctgtgaagctctgtcctcagttctcagctccaaGTCCTCtcgtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctggtGTCTGCTGGACTAAAGAGTCCATACTGCAGACTGAAAACTCTCAGtctaTCAGGCTGTATGATCACACAGGAAGGCTGTGtttctctggcctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccagaAGACTTGGGAGAGAAACTGCTGTGTGCTGGAATGAAGGATCAACATTGGAGgctggacactctcagGGTGGACCATGGTGGACTGCAGAGACTGAAACCTGGTGTGAGGAAATATGTCTGTAAATTggaactggacacaaacacagtacaCAGAAACCTccaactgtctgacaacaacaggaaggtgacataTGTGAGAGAGGATCAGTcgtatcctgatcatccagacagATTTGTCTCCTGGCcccagctgctgtgtagaaatggtctgactggtcgctgttactgggaggtcaaATGGGAAGGAAGGGTTTATATAGCAGTGACTTACAGAGGAATCACAAGGAGAGGAAACAGTAAAAACTGTTTGCCCGGAtggaatgatcagtcctggagtctgaaGTGCGCTGATGATGACAGTTTCTCCGTCTGCCACAATAACAGCAGAAAAcgcctctcctcctctgtctctgacaGAGTCggagtgtatgtggactgtcctgctggcactctgtccttctacagtgTTTCcgctgactcactgatccacctccacaccttcaacaccataTTCACTAAGCCTCTTTATCCTGCGTTTGTGGTCTCttctggttcctcagtgtctctgtgttctctgCAGGTCTGAGAGTCTCTCCTGTGGATAGAAATGCTGCTGACTGAAGATCAGCTGCTGAATTCAAAGTTCACTCTGttcaccaccacacacactgtGCACTGTGAAGCAGATCTGTCTTTGACTCAAACACAAAACATTCATTTGTCTGATGTCATCACTTTGATTATCAacatttcaacagttttttttttttttcaagattattttttgggcattttcagcctttattttgatagcaCAGCAGAagacgtgaaaggggagagaggggggggaatgacatgcagcaaagggccgcaggtcggagtcgaacctgggcccgctgcgtcgaggaataaacctctatatatgggcgcccgctctaccaaccgaGCTATCAGGGCACTCAAcatttcaacagtttaacagtaACTAGAAACATTTCATGATATGTAGTCTCACATCAcctgaccttcctccacagcactgcggaggaaggtctggcttgttcacacagcattccgggatgggagaaaaacgtgctctggtttattggcatttctttaaaccaatcacaattgtcatgggtggcgctaagcgctgGACACAATAATGTTGCCTCTACAAAATAGCTTCAGGAAGgaccttgttttggtggaacaaaaaagttgttttagttctgcaacaaaaaaaactcagattggacagatagtctggcTAGCTGTCTTGATTTACCGATTTACCGACCGAATCAACAGATAaccatagtccttataaattGTCCGGAGATAAGTAtgccaacacaaacaaagcaacaggtgagggacatccggccgaaaatgagggacatttgGCGGATCTTCCCgctgcaccggagcaatcccctaaatgaatggtcgtcgatatagactacattaTATGTAACATCTCAAAAACAACTACTTTTGGTAATTTTCAATTATACTGTCATATAtttaaagcagttttttttaaacactcacCATATTTTCTAATGTTTCTAAATACTTTTATTAAAATCTTTGCTTTTTCTCCTGAGGGCCAGCTTTTGTTTATATAGTCACCTTAATCATTTCTGTCATTACTTGACTCTCTTTACCCGCATGTTAAAACGTTTAACATCATCAGCCGTGGTAGAAAATGATTAGACATgaataaatgtatgttttttgtatAGTTATGGTTTGGTATTTTGAGAGGCCCCAGAGTTCTTCACACTTGTTATGCTTTATGTAAGGAGGCTGTGGGTGTCTGGaggttaagataagataagaaaaaGACTTCTACATGTTCCCAACTCCCATGGTAAACAGTCTGGACCACAGGCTACACAACATTGTTTTGCCTCCTCCCTGGTACCGTGATCATGCATGATTGTATGATATGGGATAGATACACTGTATAAGACTGAGTGAAGTTACTATAGCTGTTTGGTGTATTACGGTCCATGGTTACCAGCTGTATCAAGATCTTTTCTGATATTATATTTTGTTGAAATAAACTTATATGTTCATGTAATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119158 lncRNA downstream 112310 27699620 ~ 27699935 (-) True G88467
TU119112 lncRNA downstream 185174 27623990 ~ 27627071 (-) False LOC120564276
TU119077 lncRNA downstream 387610 27420437 ~ 27424635 (-) True G88405
TU119063 lncRNA downstream 434227 27376859 ~ 27378018 (-) True G88391
TU119052 lncRNA downstream 449344 27359796 ~ 27362901 (-) True G88381
TU119235 lncRNA upstream 150220 27975181 ~ 27975661 (-) True G88510
TU119238 lncRNA upstream 151004 27975965 ~ 27982294 (-) True G88513
TU119349 lncRNA upstream 314325 28139286 ~ 28206127 (-) False tspan9a
TU119348 lncRNA upstream 370306 28195267 ~ 28268474 (-) False tspan9a
TU119384 lncRNA upstream 693195 28518156 ~ 28523417 (-) True G88596
XM_039809516.1 mRNA downstream 1165 27799006 ~ 27811080 (-) False tbxas1
XM_039809519.1 mRNA downstream 1226 27799006 ~ 27811019 (-) False tbxas1
XM_039809517.1 mRNA downstream 1668 27799006 ~ 27810577 (-) True tbxas1
XM_039809520.1 mRNA downstream 21271 27786672 ~ 27790974 (-) True ccdc113
XM_039809512.1 mRNA downstream 136387 27673598 ~ 27675858 (-) True LOC120564488
XM_039808664.1 mRNA upstream 351841 28176802 ~ 28192660 (-) False tspan33b
XM_039808663.1 mRNA upstream 351841 28176802 ~ 28192659 (-) True tspan33b
XM_039808623.1 mRNA upstream 369787 28194748 ~ 28382715 (-) False tspan9a
XM_039808622.1 mRNA upstream 369787 28194748 ~ 28382715 (-) False tspan9a
XM_039808621.1 mRNA upstream 369787 28194748 ~ 28382682 (-) False tspan9a
TU119050 other downstream 456469 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 583279 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 797834 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 1137362 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 2215484 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 2897147 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 3418207 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4281662 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 4979713 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 6399300 34224261 ~ 34225516 (-) True G89849

Expression Profile