RNA id: TU119348


Basic Information

Item Value
RNA id TU119348
length 5415
lncRNA type sense_over
GC content 0.43
exon number 2
gene id tspan9a
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 28139286 ~ 28382715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggtggggggggggggggatttGACATGATGCTGCAGCGGTGGGTTAAAGACGTGGAGATGGTGTTTAATGTAATCCATGATTCATATATTTTTCATTCGGCAATAGAGAGTTAGGTAAAGGCTGCGTGATGGAGGAACGTCATGTTAGCGTGAGAACTTGTCAGTGGATTTATTTTACACAGAATTCTGCAGCATCCTCTGAAAAACAAATTGTAATGCACACATCTGcctgtgaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagcagtaTTCCCATTCCTATGAGACAATACAAATGGTGTAAAATGGCTGTTTATTAGGGCTCCACCAGGACTGTCAAGTGAAGAGATCTGAGTAATGTAGTTCCCCCTTCGAGAATACAGACtgaagtgtgtgcgtgtgtgtgtgcgtgtggcttTTCGGGTGTGTTTTAACAAATTGTCCAAGCTGCAGAAGGGACAAAAAACCACTGCATACTGTAGAAACACGGAGCAAAGCAAGGGCACAAGGGGCAAAAACAGAGCAGAGACATGTCTCCCTGCTACCATCAATTGTGTTAGCGGAGGCGGCTAGAGACCTTCTCTCCTATATTCTTGAGATCTCATCCATTTGCTCTGCCCTCCTTACTCTTCCTCGCTCTGGCTGTCGACTCCTCCCTGcctccatttttctttttttcaccccAATTTTCTTCCCACATGTCAGAAAGCAATGGGCCACAATATCTCTGCTGACATTCCTGCTCATCACATCAGTTAGTCTGGTTTGCAACTTAACTGGTTTTATGTAAGCTTCCTTTTCTTGCAGCCACAGTGGATTTGGGGAAGAGTGTAGGAGGATCAAAGCAGAGACAGATAGGTATGGCAACATGTCTGTTTACCGCTGATTCACTGCAGGAGGCCTAAAGCATCAGCCTGCATCCTTAAGACTGAAAATACTCTGCATCTTCTGTGGCGACTTAAAGAAAATGCCCTCCAGTGTGTTTGCTCTCGGCTTCAACATTTCTCCGAGATTGTGAGAGGCGGGGGTGTAAAATACAAGCTTATTGTTCTAGGTTTGTTTCAGTTCCGGCCGTCGTTTGGTTATGATTCGTTGTCATCAGTTTATGATAATGTACTTAACACAGTGAACGAAATTTCAACAACAGGGCAAGAAACAAGCAGTCAGCCGATCAGACAGGTTGTGAACAGTTTAACCAAATTAGCTACCATTTTATTCAGAAAACGCGTCAGTGAGTGGTCAGCAATAATCCCGCGTTGCACAGGATAACTGTCCGCACATTTACAGCAACGGGTCAAAGTTAAACCGGAAAGTCAGTCTGAAAActctattgtatttttttttcaaaactgttcacatttgttttctcttccaaaTAAGTTTGGCTATTCTGGGAAATCTACATGATCGTCTGACTGCTCATGTTCCTTCGTAGATAACCGGAATGAACAGGCCTCAcccagtaggaaaagcacagggtgtaaataatgaaatgaatTATGGccgaattccatttagctgctttgaTTTCAGATTCCTGGTATCGTGCGAGGAGGCGTCATCATTGGATTAAAACACGGCGCAGTAAAATCTGGTCTTTGCCGAAAGCCTCAATAGCTGATTGATTCGTTTCACTTGGGTCGGAATATATTTTACACGGAAAAAATAAACGTATGTCGCCGCCATTCGAGTGTACCCGAAAAGTTCTGTGAGGCTGAGCGCACCCAAAGAGCACCTCAGCGGACTCCATCGCTTTATTTTGTcaccttcttcttttcctaaacccaaccatgaCGTTGttgtcccgttattgttttcctaaacccaaccgtcccgttcttcttttcctaaacccaacccgttcgTCGTGATGCGAATTCCTCGAGCCGTCTttcctgctccgtctctgtgtcgCTCTTACACTGTTGCCCCTGGCAACCGATAACGTAGGATCCCAAAATGGTGGGCGGGCTCAGACACCTCCCCAAATCGTCACGTGACCGCAAGCTACCATGACGTATGTCCTCAGACTTACACGCGGACAGCTCAAAGGCGAACAGATAagacgccacttggctttagaaagtggcgtgtatgtttacgcaaagtcatgatgtcacgttgggGAGTGTGTGTAAAGGGGGCAGGGAGAGGGCGGTTAACAGTAACAAATTTAAAATTAGATAGGAGTCAAGGTATCGGCTGCATTTCcaagtagggctgaacgattttttcACCActgtgaccaaatcgcagcccttgcgattaggaaatcgtgttttaacatattgcgatattattgcaaatgtgATTAATCGTTAATCGCCctatttgcaagttttaagacATAGGCCTGAATCAGACAATGCACAGGCAATTTACCGAAACCCCTGAAGTCTTGAAATAAAGTCGGGAGTCCTCTTTATCCGAGACGAGGCCGAGTGAGAGTTTTCAATTACCCTGGCTAATTAGACCCATCCATTAGGAGAATTTTAAAGGGCACTGTGTGGTGCGTAAATTCCACACTCAGATACTAAAAATACAAGAAAGACAGTAAGAATAGCGCATTATATAGCAAACGGGGGGTGATTTCAGACACAGACCATTTTTCTGGCTTAGGCACAGAAAAGACATccctgttgctctgattggctcgtCTGTTCCTCCAACAATCAAAAAACAGCCGTCAATGAGTACAATAAGACTTTATTATATAAGTCCTAGAGTCCTAGAACCAGGCTATGTGTTTCTTTTCTCATCAGACTTCCCAGATCGCTGCAAAGAACTTGCAGTACTATTACTGATAGGAATGACGGCGCcaaactacaaaaataagacTAAGTTGTAAACGGAGATAATCAGGACAggtttgtttgctgctgttgGATACCGAGTAGAGCAATCACTGAGACCAGAAGTGGCTGCGTTCTAAATTGTATCCAAAGGTAATCATTGACAGGAGAGTTTGTAGCTTTTGGATGAAGCCTTTGGAACTCAGACTCTGTGCATTGCTTCTACATACGCCAACAAGTGACAAAGCGTTACCCACCAAGATTCACTTATTAGACATTCTTCCAGTCTGGCAGCCTGTATGCCTCAGAGTACCACCAGAAGTTATTCTtaacaggttgtttttttttagtggttTGATGACGACTTAATATAAGAGACACTTAGAGAAGAGGTCCCTGCATCGGGGAGGAAAATATGTGGGCTGTGATGTGCAGCGACCCTGCTGGCTGTGATTCACTGCCTGCCCCCATATGCTACGACTCTTCTTGTTGTGTCCACGGGGGGAACACGACAGCTGCTGATGTACAGCGCAAGCACGAGTGGTCACATCTCCACCGCTTGGCTGCCTCCACAAACTCTCCACACACATCCCTTATTTACTGCCTCGCTCTGCAGACACCCGGCGCTACATATACAGTAGCTGGCAGCACTTACACTGTGGAAATACAGCTGTGCTCTTTAGACGCCTGGAAGCAGCTGTGAGGTATGTCCTGCACCCGGGAGGGGGTCATAGGAGAAATAGCTGTATCTGGTATGCAAATCAGACTGCATTGTAACCCTCACTGCAGGGAAGAAgttcagaaagaaaaaaaaaaagccgagATAAATATTTTGTTGTGCTGCTTTGCCTTGCATTGGGTGGGAAAGTGTTTAAACGCAGGTGTGACAGAAAATGTGAGAATGGAGAAAAgtggaaataaaacaaatccagtgtcTGTCTCCAAATCTTACGTCAAACTTCATAGAGCCTCTTTGCCCCCGACTGATCTGACTGTGCTGACATTCTGACATTTTCTCCTCCGTGTGAACTCCCTTCCAGCTCTGCCACTGTCACCTAGATTTTACGCTGTTGTCAGAGGAAATGTTCCTTCGTGTTTTTAGAATGCAGGGATGAATGCCGTTTTAACAAAAgctgttttaatgttatttttgtaCAATGGTTGTCGCCGTTTTAATGTCTGTTTTTATACGTTTTTCTTCTTGTAGgccgttttttttgttggtttttttgcATTCGTGACAGAGGCTCATTGTTGCTCATTGTGAGAACATAACACCAATAAGCATTTGTTTCATAGAGGATTAGTCTTTGCGATGTTCCTCTACaaggtgcaaaaaaaaaaaaaccgccTTTCTGTCTTAACATTGCTACAGGCAGTTAAAGCAATTAAGTCAGAATTAATAGAGAGGGAAAATTTGGCATATAGCATCGGGTGAAGCCCACAAAAGACATACTGCACGCTTGTCGCCGTGCTTCTCTGTATTAAGACCTAGTTTAATTAAATTAGGACGTGCAGCTATAATCTGCAGTATGTCTTTTAAAACTGCCAGTGTAAGAACCATTATGTATTGTAGAGCATGATCTATTAGACACTGTACAACAACACCGAGCTCATGTCACTGCAGTATATCAGCCCTGTACGTTAGCCCCGGATGTAAATATGCCCATTTTACAACTGATGTAACTTACTGTTATACTTTACCTCTGCCTCTTGTAATCACATTTGCATTGACAGTTTAATTGCCATTTTGAATTGCCTAACAACCCATGCTATTTTGTGCTCATTTACAGACATATCTGCCACCCATATGTTATCCATTCTCTCATGTTTGATAGTTGTTCTGCCTCTGTGCAGGACCGGTGTCAATTTGTATAAATTTGTGTTATTTGTCAGTATGGTTTTATCTGCATCTTGTAGTAAGACACATTTgtttctgtatatatatacttttttgtttttttttggggggggggtaacAGGAGTGTTTCCTGTTATCCATGGAAGCACTCCCAGTAAACCACAGAGCTGGTAAAGGAAGAATGCACATGCAGTCATTGGGTTTTGTCTGCTGTGAAGAATTTTGACACATAGaagctattttttattttatttcaattttttgCCACCTTCAACATATTATTTCTGTAATCTCCTCCTAATCCTTCCCCCGTGCTACAGCTGAATATCTGAGCAGTGGAAATGTATGCTCTGGAAATGGTGTGTTTGATGTTGTGTTCTGCTGGGTGGCACTATCTGATACCTGCCAGCCTTGTCCTGTGGAGTTTTCTGCTACATGTGAAAGCACTCTGAATATCTATACTAGGTGGTTCACTACCTTCTCTTTATTCTCCAAATcaactattttttaaataaagaaaagagtGTCACAAAATCCCACGATACCGTACACTCATTGCCTTTCATGTTTAATGACTCGGTGCTCCTGATGTATTCCCTTTTTATGCCACTGTCAATTATATAGGCAGCATTTAAACAGTGTTTGATGCtgatttttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119238 lncRNA downstream 212973 27975965 ~ 27982294 (-) True G88513
TU119235 lncRNA downstream 219606 27975181 ~ 27975661 (-) True G88510
TU119188 lncRNA downstream 381979 27812371 ~ 27813288 (-) False LOC120564781
TU119158 lncRNA downstream 495332 27699620 ~ 27699935 (-) True G88467
TU119112 lncRNA downstream 568196 27623990 ~ 27627071 (-) False LOC120564276
TU119384 lncRNA upstream 249682 28518156 ~ 28523417 (-) True G88596
TU119406 lncRNA upstream 524238 28792712 ~ 28792984 (-) True G88613
TU119424 lncRNA upstream 588997 28857471 ~ 28940229 (-) True G88625
TU119436 lncRNA upstream 619530 28888004 ~ 28889684 (-) True G88636
TU119513 lncRNA upstream 822556 29091030 ~ 29093595 (-) True G88706
XM_039808664.1 mRNA downstream 2607 28176802 ~ 28192660 (-) False tspan33b
XM_039808663.1 mRNA downstream 2608 28176802 ~ 28192659 (-) True tspan33b
XM_039810034.1 mRNA downstream 370306 27812245 ~ 27824961 (-) True LOC120564781
XM_039809516.1 mRNA downstream 384187 27799006 ~ 27811080 (-) False tbxas1
XM_039809519.1 mRNA downstream 384248 27799006 ~ 27811019 (-) False tbxas1
XM_039809674.1 mRNA upstream 250584 28519058 ~ 28543251 (-) True cracr2aa
XM_039809675.1 mRNA upstream 250584 28519058 ~ 28543081 (-) False cracr2aa
XM_039808915.1 mRNA upstream 690916 28959390 ~ 28974789 (-) False utp4
XM_039808916.1 mRNA upstream 690916 28959390 ~ 28974767 (-) True utp4
XM_039808920.1 mRNA upstream 720481 28988955 ~ 29018749 (-) True has3
TU119050 other downstream 839491 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 966301 27224052 ~ 27228966 (-) False zgc:153031
TU118864 other downstream 1180856 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 1520384 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 2598506 25596353 ~ 25596761 (-) True G87897
TU120007 other upstream 2453634 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 2974694 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 3838149 32106623 ~ 32108066 (-) True G89365
TU120516 other upstream 4536200 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 5955787 34224261 ~ 34225516 (-) True G89849

Expression Profile