RNA id: XM_039807387.1


Basic Information

Item Value
RNA id XM_039807387.1
length 2403
RNA type mRNA
GC content 0.50
exon number 3
gene id si:ch73-62b13.1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27190915 ~ 27202925 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGAGACTGAGCTCCAGTAGCCCGTGTGGTCTCCGGAGGGGAGAGACATGCCTCCTCCTCGCGCAGCCTCGCGCCCCTCTCTATCCATGGCGCATCTCCAGCTCTGAATCCACTTCGGCTCTGGACACACCGGCGGCAGCGCTCGAtccaaacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactagaggaGGACTAGACCGGCCGAAGAAATCCGATCGAGTGCGTTGATGCGTGAAGGATGTAGAGCCAGAGGGGGGCAGGATGGAGTGCTCCTGGAAGacggtgctgctgctggtgtgtgcgtctctTGGGGTCCAGTACACGGCCATCCGGACCCTGAGGGACTCTCTGTCTGGGCCCTGTCAGGGAACCTACCGCTGCCAGACCAGACACCACAGAGACTCCAGATGGAGAGCCTTGTGTGATGACAGTTGGATGCCAGTTGAGTCGCCTCGGAAGCACATCCTGCTGTTTGCCACCACGCGCAGCGGCTCCTCCTTCACCGGGCAGCTCCTCAACCAACACCCAGGGATCTTCTATGTGTTTGAACCTCTCTACCATGTCCAGCAGGCCTTCACCAACTCCAGCAGCAGGTTGCGTCGCACCCTGGACCGCCGGGCCCTACTGGGAGCGTACAGAGACCTCCTCCTCAATCTGTACACCTGTGATCTTCACTTCATGGAGAACTACATCCGCCCGGAGCCCCGGGACCACGTCACAAGCTCCTACTTCCGCCGAAGCTCCAGCCACGCGCTCTGTTCCCCTCCCGTGTGCTCGGAAGGAGGGGACGTAGCGGCCTCTGATCTGCCCGATGAAACGTGGTGTCCTAAGAAGTGCGGGGCCCTAAACCTTACCCTAGCCTCCATGTCATGTCTGTCAAGGGAACACGTAGCCATAAAGACTGTGCGGGTCCCTGAGGTGGGAGACCTGCGCACCTTGACAGAAGATCCACGCCTGGACCTGAAGATCATCCACCTGGTGAGAGACCCCAGAGCCGTCCTCGCCTCACGCATGATGGCGTTTTCAGATCAATTCCGCGCTTGGAAGATATGGAACGCGACCGGGCGGCAGCCTCGATACGTGGACCTGACGCAGATCACCAGCACCTGCAAGGACATGGCTGCCTCCGCAGAAACAGGCCTGCAAAGACCGGCATGGCTGCGGGGACGCTACCTGCTGGTGCGGTACGAGGACCTGGCGTTCAATCCGAAGGACAAGGCCACTGAGATCTACAGGTTTGTGGGGCTGGAGATGGAGGACAGGGTGCGGCTGTGGATTGCAAAGAACACCAACAGTAATGGGTCGTCTCCGTCAGAGTGGAACTACAGGTACTCCACCACCAGAGACTCCAGGGCGACAGCAGAGAGCTGGAGGCTTCGTCTGGGCTTTGACATCGTGAGGACTGTGCAGAATCTGTGCAACGACACTCTGGCCCTGCTGGGATACAAGCAGGTTCACTCTGCAGCTGAACTCCGAAACTTGTCTCACAGTTTAGTGGAACACAGGACCTTTCAACCAGTCACATGGTAGAAAAAAACGTTactgtttatttctttatttcagcTGACTTTCCTCTCTGTCATGATGCTGATAACATGAATGTAATTTATCTTATTTTTCAATAACGCCTAAACTGATATCACTTTTTATGGTTTTGTTAAAGATATTAAAAGTGCCAAATGTCAAGCGTGTGTGATGCTGGAAAAAGTATTGATCCAGAATTAAGTCCATACTgctgtatgtgttgattgaaaaTTCTTCttgaattcaatttcaatttcaatttttttgaaTTCTTCAATGAATTGAATTTTAGTATTTAAACAGGGGGGGAAAGACAGTCGAAAGAGCCCAGGTACCATTTCAGAGTAAATCTGACCCTAAATCAGACACACAGGAAGGGGGATGTatttgtcaaataaataaataaattataggGCTTGCCTTCCAAGTATCTCTAATGCATTTTTGGAAAAGGATTAAAATGTCACGTTGTAGGAAGAATATCTTCTGCAGAGCACTGCAGCTCTAATTTCTATGTGAAGATGGGTCTCATAGaaccaaggtttttttttttgtaaatactgATTAACTGTTGCAATGCAAGTGTGCAAATGTTATGTGCTGGATGTGTTTGAACATTTTATTGTCACTGTAACAATACTGTTTATATTTTCTAGACTTtttcaaataaattattaatatgTAAGTATTTGTCACGCTGCTGAAATCTTGAAACCGCatttgtttgatgtgttttcttCAAATCTGAGACAAAAGCGGATTCGAGTTTTGGTGCTGAAAACCGAGAACGGTACAAAATCCATTGTCTTTTATCTTGAAATCCCTCTGTATTTGGCTTGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118942 lncRNA downstream 20648 27169988 ~ 27170267 (-) True G88305
TU118902 lncRNA downstream 129779 27060552 ~ 27061136 (-) True G88274
TU118898 lncRNA downstream 133983 27055670 ~ 27056932 (-) True G88272
TU118856 lncRNA downstream 186730 27003091 ~ 27004185 (-) True G88245
TU119051 lncRNA upstream 159067 27357079 ~ 27358179 (-) True G88380
TU119052 lncRNA upstream 161784 27359796 ~ 27362901 (-) True G88381
TU119063 lncRNA upstream 178847 27376859 ~ 27378018 (-) True G88391
TU119077 lncRNA upstream 222425 27420437 ~ 27424635 (-) True G88405
TU119112 lncRNA upstream 425978 27623990 ~ 27627071 (-) False LOC120564276
XM_039810046.1 mRNA downstream 47604 27135856 ~ 27143311 (-) True etfbkmt
XM_039808766.1 mRNA downstream 113082 27061216 ~ 27077833 (-) True washc4
XM_039808765.1 mRNA downstream 113128 27061216 ~ 27077787 (-) False washc4
XM_039808767.1 mRNA downstream 113549 27061216 ~ 27077366 (-) False washc4
XM_039807775.1 mRNA downstream 140088 27049172 ~ 27050827 (-) True lrrc10
XM_039807473.1 mRNA upstream 25950 27223962 ~ 27229372 (-) True zgc:153031
XM_039807472.1 mRNA upstream 25952 27223964 ~ 27229368 (-) False zgc:153031
XM_039809245.1 mRNA upstream 31814 27229826 ~ 27240938 (-) True cry1b
XM_039809137.1 mRNA upstream 426088 27624100 ~ 27650062 (-) True LOC120564276
XM_039809138.1 mRNA upstream 457452 27655464 ~ 27669472 (-) True uri1
TU118864 other downstream 176504 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 516032 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1594154 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 2125427 25064752 ~ 25065488 (-) True G87803
unassigned_transcript_380 other downstream 3275009 23915834 ~ 23915906 (-) True trnar-acg_18
TU118971 other upstream 26040 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 156960 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3524096 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4045156 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 4908611 32106623 ~ 32108066 (-) True G89365

Expression Profile