RNA id: XM_039807432.1


Basic Information

Item Value
RNA id XM_039807432.1
length 2715
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC120563329
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19753404 ~ 19761910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGGTGGGGAGATGAGGACTACAGTAGCCTCACCCATTCAAAGAGAAGAAATAACTTGGATCTAGGAAGACACTCCAAAAATGTTTAGTCCCTCATACAGAAGTTCAAGTCCATTTTCTCTCACGGACCTCAACATGTGGGACACCAAATCTTGCTTTTCAGCTCAGACCTCAGCATGGTATGGTATGACAACTGGAGCAGGATTTCTGTCCAAAGTCAGTGCAAGCACATCTGGGAGCACTGGTGGCTTCAGACAAAATGACCCAGGTCTAAGGAAGTGGCAATCATTGTCCCATCTGGCACTTGAGGGTGCACCACAACCTTTTCCTCCATCTCCAAGGGAAGAATTAAGGGCTGCCCGAGGTGAAAGCAGCTTTAGACAAGCACAAGGGGTGCAATGGCTGCAGGATGCTCATGAGCGTTTAGACACTCAGCTGGACCGACTGAGGACCAGAAATTCACAGCTGAGCTACAACATAACTACTGCACAACTGTTTGACATGAAACGTAAGCAGCTGTCAGAAACGATGGACGCTCTTGAGCAAGAGAAGGAGGCAGCTGGATTATCCCAATTTGAAAAGAGTCGGCAACGTGGAGAGCTTCATGAAAAGGTCCTACAACTGGAAAAGGAATTGTTGCAAATGAGGTCTTCTTTGGACAGAGCAAGCAATGATCAACTAAATGAAAGAACTCCTGGCTCGCTCTGCAGAACATTACCAATGAGTCAAGAAGACTTTAACAGGCAGGAGAGGCAGAAGGTTGACACAGAGCTATGCAAGCTGAGAGAGGCTCTGAGAGAAGCTGAGACGAGGGCAAAGACACACGAACAAGAACGAAACCAGGCACTCCAGAAACTCCAGACTACTACAGAGACACAGAGGGCGCTGTTGAATCAAGTAGAGGAGATGAATCATAAAAGACAGAATCACTCTGACATGCAAAAACAGCTGAATGAAGCTAACAACAAGATCAGCCAAGCATGCCTGGAAAAAGCCCTCTTGTCAACTCAAGTGCTAAAGCTGGGGAATAATATAAAAGAACTGAAGGCCAAACTGACAATGGCTCTGTCTAACAAAGATTGCCTGATGCAGGAGAAAGCAGATCTGCACCAGAGGGCCCAGGTCCTGGAGCTGCAGCTACAGAGGGCCCAACAAGGTTCAGAGGGTTGTGACACTGAGTCCCACAACAAACAGGATCAGGAAACTGTTCTGATGAAGGGAGAATTTAAGGCTCTTAAAGAGGTAAATGAAAAGCTGTCATTTGAGCTTGAAATGATTGAGCGGAAACTGAAAACATCACAGACTCAGCTACAGGAGGTAACAGCAGAGAGGGACACCAATTCCAAACAGATCACAGATCTGGAGGCAGAACGATCTCAGCTGATCACAGAAAAAGAGGAGCTGTTGAGTAAAATTAATGAATGTGGACATGAGGAGTTAATGGAGATGAAAGAAAAGTTCCTGCAGCTGAGGGAATCTGTGGCCGTTTTGGTATTAGAAAAACAGAAACTGCAGgatcagtgcttgtgtttggagGCTGAGGTTCTTGAGAAGGAGGAGAAGCTACACCTGCAAGACAGACAGCATCAGGAACAAGATGCAGTGAGCGTTCAGAGCATCGAGGAACTAAAAGCTGTGGCCTCGCACTGGGCAGAGAAATGGCAAAAAGTGGCTTTGACCCTGCAGTCCACACAGGAGGAGCTAGAGGAACTCAAAAAGAACAACTCCAGAAATGAACTCCAAGTGGAAGCTGAACATCTGGAAACTGAGATTGAAAACCTTCAGAAAGAGGGCCTGAAAAGCAGGGAAGAAATTGAGAATCTGCTGCAGCACAAAGCTGATTTGGAAACAGTCCTGACCAAAGCAAAGAAGAAATCAGACTCACTGCTAAGGGTTGAGCTTGACGCATGCAAACAAGAGCTTGAGCTGGAAAGGAGCAGAAGTCAGGTTTTGCTTCAAATATATAAAGATAAAGGCAGTGAAGCCTCAGTGCAGActgaggacacagagacacagacagaCTTATCAGAATCCTCTTTGTTATGGGAGCAACCATCAGACTCTCACAGCAGCCAAAACAAAGCCCCTCAGGCATCTCAAGATGATCAAGATGATGGAGGCCAAGCAAATGTCTCGACCACTGACTCACTGAGGGCCCAGCTGGAAGAGAGCAGGAAGAGGATGAATCAGctgaagcagggggaaacagcaatCCAGAAGCTTCAAACACTGAGGCAGCTTTACCTGGTTAAAGATGACAAACCATCTGTTGAAGGCAGAAAAGATAAAACTGTCTGTCCAGTTAATCTGGAGACAGAGCAGCAGAGGAGGATGGTCACTGAGCAGTTAAAGAGTCTGTTTAAGGAGCGAGAAGTAAAGGAGGTGGAAAAGGCTGACAACAGATCAGCAGCAGGTCAGACTGAAGCATCCTCACTACAAGACTGGTCCCAAACATCTAAAGTTTTAAGGAATCCAGTGGACAGGAGGAGCTGGCAGCAGGGCCCAGGTTTGATGCCAGTGtttgaggaggatgaggagggcaGTGACTGgccaggaggggaggagggaaagcAAGCAGAAGAGGCTCATGCTGAGGAAAACTTCCACAACCAAAGCCAACAGCCACACTAAGGTACAAGCAGCCAACCCAGGACTGCCCTTCTGCTGCCAAGAAACTATCAGACAAGTCCTCTCACTGGTCAGATGAGATTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116631 lncRNA downstream 28543 19723973 ~ 19725193 (-) True G86549
TU116624 lncRNA downstream 57921 19694995 ~ 19695815 (-) True G86543
TU116619 lncRNA downstream 74647 19674923 ~ 19679089 (-) True G86540
TU116589 lncRNA downstream 135690 19616653 ~ 19618046 (-) True G86517
TU116588 lncRNA downstream 135973 19609405 ~ 19617763 (-) False G86517
TU116652 lncRNA upstream 12397 19774307 ~ 19777043 (-) True G86566
TU116662 lncRNA upstream 59630 19821540 ~ 19823373 (-) True G86575
TU116708 lncRNA upstream 252428 20014338 ~ 20015812 (-) True G86605
TU116779 lncRNA upstream 479523 20241433 ~ 20241850 (-) True G86652
TU116787 lncRNA upstream 488980 20250890 ~ 20252526 (-) True G86660
XM_039808279.1 mRNA downstream 46609 19700154 ~ 19707127 (-) True LOC120563845
XM_039809050.1 mRNA downstream 123846 19623665 ~ 19629890 (-) False parp16
XM_039809049.1 mRNA downstream 123847 19623665 ~ 19629889 (-) True parp16
XM_039808104.1 mRNA downstream 155374 19582672 ~ 19598362 (-) False atp8b4
XM_039808103.1 mRNA downstream 158825 19581787 ~ 19594911 (-) False atp8b4
XM_039809695.1 mRNA upstream 26801 19788711 ~ 19798138 (-) True nat10
XM_039809696.1 mRNA upstream 26801 19788711 ~ 19798136 (-) False nat10
XM_039809697.1 mRNA upstream 27059 19788969 ~ 19798138 (-) False nat10
XM_039809702.1 mRNA upstream 37222 19799132 ~ 19812873 (-) False caprin1b
XM_039809699.1 mRNA upstream 37222 19799132 ~ 19812872 (-) True caprin1b
unassigned_transcript_376 other downstream 70819 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 181814 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 365161 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 436326 19315435 ~ 19317410 (-) False arpp19b
TU116124 other downstream 742820 19007196 ~ 19010916 (-) True G86194
TU116763 other upstream 490729 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 1044972 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 1115801 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1951132 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1973096 21735006 ~ 21739328 (-) True LOC120564778

Expression Profile