RNA id: XM_039807478.1


Basic Information

Item Value
RNA id XM_039807478.1
length 3567
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120563353
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23577578 ~ 23584567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCCTTAACAAAACTCCCAACAGAGCAGTGCTTATTTTTACAACTTCCTTATACTGTTGTCGGCCACCCATTGCTGCACTGCTTTAGAAGTTTATTAACTACAGGTTTCCTTAAAAGCTACATAGCAGATCTGCGACCTCAGTCTACGTCCTCCTTGACGCTGGTTGCCACCCGccataaaatagaaaaaagaagaaaagtgacTTCAGTGCATTTCAGTCAATCAGACAGCACAGATGGCAGAGAGTGACAGGTGGATGGCAAGatAATGGAGCCAATGAATTCACCTGAAACTGCAGACATTCAGTCAGAGCCTGCTGTCCCACTGCCTCCTTCTATTTATGTTCCTCCCCCACTGAGAGATGGTGAGTGTTACCATGTCTTCATCAGCTACAGCAGCACTGACTACCAGTGGACCCACTCCGTCATCAACCAGCTGGAGTCCTGCGGCCTGCAGGTCTGCTACCATGAGCGGGACTTCACTCCCGGCCGCACCGTGTTGGAAAACATGTCGGACTGCATCCAGGAGAGCCAGAAGGTGCTGCTGGTCCTCAGCCCGGAGTTTGTGAGGAGCCGCTGGTGCCTCCTGGAGGCCAACATGTCTTTGTTCAGAGATTGCTTGGGGAGGAAACCCATCGTCCCAGTGCTGCTGGAGCAAGGAGTCTCTGTTCCTCTCCACCTCTGCCACCTCACCTACCTGGAGGCCAACGACCCCGACTTTGAGAGTAAGCTGCTAAAGGTGCTCTGCACCGCCAACCAGCAGCTTCAAGGGTCCACTGTGGTGCCTTTCCAGCCTCCCTCTATCTACAACGGGAAGGTCCTGCAGCCTTTGATTGCCGTCAACGAGGAGGGACTAAGTAAATGGGATTGTGGTCAGTTCAGTGACATGGAGGTGCCGGACCAACTGCGCCTGATCATTGAGGACCACGACAAGTACAGAAAGGCCGTGAGGATGATCAATAGTGTctctcaaaataaaatgcactcACTTTCGTTTACAATACTGACAGGTGTTTGTTTTACAGTATTGTTTTTACTTATGCTGGCTTTAATCACAATGGTGATTGTCTTCACAATGGATTCATTGAAGAATAGAAATATTTGGGGGCTCTTTATTTCTTGTTCCTGCTGTGTGCCATTGGGTTTGCTTATTGAGGCTGCTCTCTGGGAAAAGGATCAATTGAAGTACATAGTGAGGGAAATGCAGAAAGCTATAGGCCAGGCAAACATTATCCTCTGTGAGGACAAGGTGTTAATGGGCTGTCGGTCCAATTCAAAAATCTATCTGGTGTATGTTTCTCTGGACGGTTGCAAACGTGAGTTTGCAGAAACATTTTCTGAGCAGGCTTGTGCTGAGGATATGTTTCAAAGAGCTCTGACCTTCTTCTCATCAGGTTACGCCTGCTGCCTTGCTAAAAGACACTTTCCCTTTCCCCAGCCCGGCTCCACTGGTCACCTGGAGGGAGGGGTGTGTTTCTGTCAGTACGTCTCTCAGCAGCTGAGTACAGAGCAATGGGAATAGTAGTGTGGACAAGTTTGTCTGTTGGTACTTTTTGATGAAAACTCACCTCATCAACATGTCTGGACTCATACGAGCGTCGAGAGTCATTAAAGGCACAGTAACTTCATTCATGTTAGAAGCCCCTCAGACATCAGAACGGACACTGTTCCTTTAACGGACCTGAAAGcagaacaatgtttttttttttttttctggtttccGAGTTTACTTTCGGTTCTTGATCATCAACACGGTGTGACCAGTCTTCATTGTATTTGCTTGAATTTACTTTATCATGAACAGATAATGGAGCCAATGAATTCACCTGAAACTGCAGACATTCAGTCAGAGCCTGCTGTCCCACTGCCTCCTTCTATTTATGTTCCTCCCCCACTGAGAGATGGTGAGTGTTACCATGTCTTCATCAGCTACAGCAGCACTGACTACCAGTGGACCCACTCCGTCATCAACCAGCTGGAGTCCTGCGGCCTGCAGGTCTGCTACCATGAGCGGGACTTCACTCCCGGCCGCACCGTGTTGGAAAACATGTCGGACTGCATCCAGGAGAGCCAGAAGGTGCTGCTGGTCCTCAGCCCGGAGTTTGTGAGGAGCCGCTGGTGCCTCCTGGAGGCCAACATGTCTTTGTTCAGAGATTGCTTGGAGAGGAAACCCATCGTCCCAGTGCTGCTGGAGCAAGGAGTCTCTGTTCCTCTCCACCTCTGCCACCTCACCTACCTGGAGGCCAACGACCCCGACTTTGAGAGTAAGCTGCTGAAGGTGCTCTGCACCGCCAACCAGCAGCTTCAAGGGTCCACTGTGGTGCCTTTCCAGCCTCCCTCTATCTACAACGGGAAGGTCCTGCAGCCTTTGATTGCCGTCAACGAGGAGGGACTCAGTAAATGGGATTGTGGTCAGTTCAGTGACATGGAGGTGCCGGACCAACTGCGCCTGATCATTGAGGACCACGACAAGTACAGAAAGGCCGTGAGGATGATCAATAGTGTCTCTCAAAATAAAGTGTGGTTGCGGCAACTTTGGCTTAGAGTACTGATCTACATTAcaggtttaattttttttttaatctcggtagcattttttatatttccaaCATTCCTACTTATTGATGTCTACAGTTTGACCAGAAAGTACCCTATCCTATTATTGGTCCTCActatttctagtttcttctgtGTTCCACTGGGGTTGCTTATTCAGATGGGTCTCTGGAAAAAGAATGATGAGAAATACACATTGAGGGAAATGCAGAAAGCTATATGCCAGGCAAACATAATCCTCTGTGAGGACAAGGTGTTAATGGGCTGTCGGTCCAATTCAAAAATCTATCTGGTGTATTTTTCTCTGGACGGTTGCAAACGTGAGTTTGCAGAAACATTTTCTGAGCAGGCTTGTGCTGAGGATATGTTTCAAAGAGCTCTGACCTTCTTCTCATCAGGTTACGCCTGCTGCCTTGCTAAAAGACACTTTCCCTTTCCCCAGCCCGGCTCCACTGGTCACCTGGAGGGAGGGGTGTGTTTCTGTCAGTATGTCTCTCAGCAGCTGAGTACAGAGCAATGGGAATAGCATAACATTATGGGCCTGCAATGAGTAACTCGGTGCAACTGGTGATTCAAGACAAATCATTTTTCTTTGGATTTCTTTTTCAATGACCCCAagtttatattttgttgtacctTTGATGTACACTTTTGATGTATTGTGAGTATGAATGTTATGGATGTACGTATTCCAGTTAATGTAATATTCTTATGGAAAAATAGACCCCACGAAGAGTAGCTTCTGTTTGAGACAGGCAGAAGCTAATAGGGATCTTAgtatacaaacaaacaatattatATAAAGATTACCAAGCAAACAACTCCCTGTTCGTGGCATATCATTTCCCATACGTTTCTCTACATCAAGTAGAGACGCAAAACAGATGGGGAGAGATTAATTTGCAGTTTCctattttatataattattcTTGAATAGCTAGTGTTgtcatatttttgtgtttgatcATTTTCATGCTGTTTCCATTGTTAATTACTtcaataaaatgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117898 lncRNA downstream 159725 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 339046 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 352937 23198588 ~ 23224641 (-) True LOC120563856
XR_005640017.1 lncRNA downstream 360440 23198572 ~ 23217138 (-) False LOC120563856
TU117838 lncRNA downstream 428234 23149119 ~ 23149344 (-) True G87464
TU118029 lncRNA upstream 45159 23629726 ~ 23630285 (-) True G87596
TU118056 lncRNA upstream 96181 23680748 ~ 23737505 (-) True G87614
TU118160 lncRNA upstream 453317 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 457891 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 774426 24358993 ~ 24359284 (-) True G87733
XM_039809914.1 mRNA downstream 21502 23551853 ~ 23556076 (-) True avpr1aa
XM_039808562.1 mRNA downstream 40053 23503797 ~ 23537525 (-) True ppm1h
XM_039808563.1 mRNA downstream 40054 23503797 ~ 23537524 (-) False ppm1h
XM_039809707.1 mRNA downstream 155121 23411510 ~ 23422457 (-) True LOC120564579
XM_039808896.1 mRNA downstream 169909 23391490 ~ 23407669 (-) True fbln1
XM_039808217.1 mRNA upstream 62814 23647381 ~ 23650377 (-) True LOC120563807
XM_039809246.1 mRNA upstream 68978 23653545 ~ 23663803 (-) True LOC120564359
XM_039809958.1 mRNA upstream 111466 23696033 ~ 23733655 (-) True ptdss2
XM_039809957.1 mRNA upstream 111466 23696033 ~ 23732295 (-) False ptdss2
XM_039809960.1 mRNA upstream 114593 23699160 ~ 23732297 (-) False ptdss2
TU117944 other downstream 78919 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 871382 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 871382 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1838250 21735006 ~ 21739328 (-) True LOC120564778
TU118073 other upstream 154415 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 320535 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 324602 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 324602 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 331267 23915834 ~ 23915906 (-) True trnar-acg_18

Expression Profile