RNA id: XM_039807480.1


Basic Information

Item Value
RNA id XM_039807480.1
length 3249
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC120563354
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13002120 ~ 13014975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAATTCACTTTATTACTTGCCATGGCAGAGGAAAGGGACCAGACTGGAGCCTCCTGGGGGGACCTGCCACAACCTGATGAATATCCTGAACCACATCTGGAGGACGGAGCTGTGCTGAATGGAGAGGCGAAGGAGAAACCCACCAAACATGAGCCAGTAAAATGCAAGCTCAACCTACTGCAGATGCTAAAGGCCACAGAGAGCTGGAGCCCACCTCAGAGTCGGGACAGATATGGGGCAGAGAAGTCTGAGGTTGGAACAGGAGAGTTGGTGCCTGAAGCTCTGAAGACGGGCATGCAAATACAGTTCACTGAACAGAAGCCAAAATTCAACAAACATTCTGCCAACACCAGTTGTCGCTCTCCGGCTGGTTCCATCTCACAGTCTATAGATAGCTACAGTTCAGTGTGCAGTGAAAGCGAGGATGAGTCCTCTCCCAGAGACAAGCCTCAGAAGACCTCCAAAGGCCTTTCTGACTTCTGcatcaaaaacataaaacaggCTGAATTTGGACGCAGAGAAATAGAAGCCGCACAGCAAGAAATGCCAGCACTGATGGTCCTGAGGAAAAGAGCATGTGGGGAGAAACCTCTTGCTGGTGCCAAAGTGATGGGCTGCACACACGTCACTTCACAGACAGCGGTGTTGATTGAGACTCTGTCTGTGTTGGGGGCTCAGTGTCGCTGGGCGGCCTGTAACATCTTCTCCACTCAGAACACTGTGGCTGCTGCTCTGGCTGAAAGAGGCACTTCAGTGTTTGCGTGGAGAGGAGAATCAGAGGAAGACTTCTGGTGGTGTATTGACCGATGTGTCGGTGCTGAGACCTGGCAGCCCAACATGATTCTGGATGATGGAGGGGACCTGACCCACTGGATCTATAAGAAGCACCCAGACCTGTTCAAGAAGATCATAGGCATCGTGGAGGAAAGTGTGACAGGCATCTATCGGTTATACCAGCTATCAAAGGCAGGCAAGCTGTGTGTCCCAGCCATGAACGTTAACGACTCGGTGACCAAGCAGAAATTTGAAAACCTTTACTGCTGCAAGGAGTCCATACTGGATGGGTTGAAGAGAACCACTGACATCATGTTTGGAGGAAAACAGGTGGTGGTGTGCGGCTATGGGGAGGTTGGCAAAGGTTGCTGTGCTGCCCTGAAAGCATTGAGTGCTGTCGTATATGTCACAGAAGTGGATCCCATTTGTGCCGTTCAGGCCTGCATGGATGGCTTCAGAGTGATTCAGTTGAGGGAAGTGGTCAGACAGGCAGACATGGTCATCACCTGCACAGgCAATAAAAACGTGGTAGAGAGGGAACATCTGGACAGAATGAAGAGCGGCTGCATCGTCTGCAACATGGGACACTGCAGCACCGAGATTGATTTGTTGAGTCTGCGGACTGCAGAGCTGAGGTGGGAGCGTGTGAAGCCTAAGGTGGACCATGTTATCTGGCCTGACGGCAAGAGAATCGTCCTGTTGGCCGAGgGCCGTTTGTTAAATCTGAGCTGCTCCACGGTGCCCTTATTTGTCATCTCCGTCACCGCAACAACTCAGGCTCTGGCTCTCATAGAGCTGTACAGTGCTCCAGAAGGACGTTACAAACAGGACGTCTACCTGCTGCCAAAGAAGATGGATGAATATGTGGCCAGTCTTCACCTGCAGACATTTGACGCTCACCTCACAGAGCTGACTGATGAACAGACCAAGTACCTGGGCATCAGCAAACACGGACCCTTCAAATCCAACTACTACAAgTATTAATCCTCTGGACATAAAGCCGAAGCAGAAGTTCTTCAGATGTTCTTTTGTGGATTTGATGTTGAAAATAACCCCCACAGTCCTACAGACAGAGCACTGTCGCCCTCTACAGTCTCAATCGTACCCACACTCAATATTGTTTAGAGACAGTGGACTTTTACTCGTTCACtgatttttttgtgtacttACGTGTATCTGTTTTATGTGTTACACTTTTCCTggttataatataaatatatgttcaCAGTAACCAGAATGTAATCACAGTAAATTCTTAATTGAAACTAAAAGAGTATAAAATCAAGAGAAACCCAAAATGTTGAATGGGAGTTATTTATTCTTCTGCTTGAAATAATAACAACACCATTTATAAATTGGAGCAGCAATCAGTAAAGTATATTTAACCGACCACATATAACGACTGTTAACAGTTCACACCTTATGTGATCAACAGTCTTTGTCAACTGAATATCTGCTGATTATCAGTGAGGGAACACATTTAAATAGTTTCATGTCTCGTGCCCTATACTCCTGATTTATATCTAACATTACCACATTTACCTTAACTTCATGAAAGGAATGCTAAAAGTTGACATATTTTCATTGGCTTAATGCTCTCAAAGATAATTGTAGTTAAGCACGCATAAGATATCTTAATAACAAGAACAGATTTCCCTGCTTCTCTGTCTCACAAAAATTAGTTAACTTAACGTTTTCTTGTTGACGTTAGAACAGCATgaacagtattttattttgtttaatgtCTATGCTCACATCTGTGCTCATACAACCCCCATACATACAAGGTGTccctatatattttttattaaactctAAATTGCAATCAAAAAACAATGACTGATGGTAATGCTAATAAGCTCGACCTGCAGGTTGGAAGCAGCTCACTCAGCAGCTCTACAAAGACTGCACAGCCTCATAAGTGACTGTTGCCCCACTAGAGGGCGGAAGAGCACTGTTGTCTTTGGGTGATACTCACCATGAGTATAATTGCTtatatttctgtcattttaaggCTTCGGTATTTATcctgttaaaaatatttagcACCGGCATACTTTTGTACGTAGCAAGAAAGACCATTCTCAAGTTCTGGATATCTAAGAACACCCCCTACACTGGACGATTGGTATAGGGAAGTCTTGGAAATACTcccattggaaaaagtgactcATACCCTGCATGACAATTTCGAGGGATTCATCAAGATATGGCAACCAGTTCTGGCCATGGTGGACCCCTCTGGACTGAACTTTGTCTCACCCAACTAACAACATAGGATCTGACTACAGCCTGTTCTAGCAATTTGAATATAACTAGGCCTGCAcggtggtgtgtgtctgtcttttcattattttttaggttattttatcattattttaggGGTATGTCtcactttgtctttttttttttttcatggaaaATGTGGTTCTATACATAACTGGAACGGAAATGTGTATATTGAATACCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113597 lncRNA downstream 18060 12972389 ~ 12984060 (-) True G84376
TU113591 lncRNA downstream 53197 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 53511 12948274 ~ 12948609 (-) True G84369
TU113560 lncRNA downstream 62703 12938044 ~ 12939417 (-) True G84350
TU113547 lncRNA downstream 92174 12908967 ~ 12909946 (-) True G84338
TU113690 lncRNA upstream 178294 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 185968 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 220198 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 221676 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 231853 13246828 ~ 13249798 (-) False prr5a
XM_039808886.1 mRNA downstream 27711 12965964 ~ 12974409 (-) True LOC120564144
XM_039808885.1 mRNA downstream 57884 12940996 ~ 12944236 (-) True LOC120564143
XM_039808882.1 mRNA downstream 70908 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808821.1 mRNA downstream 227865 12760632 ~ 12774255 (-) True slc17a8
XM_039809445.1 mRNA downstream 245232 12743161 ~ 12756888 (-) False nr1h4
XM_039809178.1 mRNA upstream 1590 13016565 ~ 13026368 (-) True LOC120564327
XM_039808101.1 mRNA upstream 132872 13147847 ~ 13152704 (-) True LOC120563727
XM_039809918.1 mRNA upstream 140436 13155411 ~ 13158096 (-) True kxd1
XM_039809640.1 mRNA upstream 144338 13159313 ~ 13166108 (-) True sinhcaf
XM_039809220.1 mRNA upstream 152343 13167318 ~ 13187582 (-) True LOC120564344
TU113260 other downstream 857574 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1113722 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2339442 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2569976 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2822123 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 215642 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 558856 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1016129 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1208275 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1486985 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile