RNA id: XM_039807488.1


Basic Information

Item Value
RNA id XM_039807488.1
length 1536
RNA type mRNA
GC content 0.45
exon number 2
gene id trex4
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10683853 ~ 10686618 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcaaaaatgttctgctgtgaaaaaggtccatataGACTGGAGAAGGTGAGAAGGGATAGGATCAAGGGGGCAGGTGGTTGGGCGGGCGGAGGTAATCAAAATCAGAGTTGTGAGATCGTCCAGCTGGCTGCAGTGAGTGGAAGCCACTCTCTCAACCTCTACGTCATCCCTCGGTGTCGAATGCAGCGAGGAGCAGCCAGAGTGACCGGCTTCAGGGTCCGCAGACAGAGATTGTACCTCCATCGACAACTGGTCCTCACCAACTCCCTGCGAGAGGTCCTGGTCTCCTTTATAGCTTTTCTTCAGATGCTCAGAGGCCCGCTTGTCATTGGCCACAACATCCGCCGCTTCGACTGTCCGCTGTTGGCTCGAGCTCTCGATGAACTGGACCTCAGGGCAGAGTTTGAGTCGGCAGTCTCCGGCTGTGTTGACACTCTACCACTGGCTCGGGAGATGCTGAAGGACCGCGGCCTCCAGAGTTTTCGACAGGAGAACCTGGTCAGGGAGCTCCTGGGTGTGAGCTACAAGGCCCATGATGCTTTGGAGGATGTGCGGGCATTACAGGCACTGTTTAGTGTGCTTCAGCCCACACCAGAATTGATCTGTAGGCATAGGTTTACTCTGGACACCATGGAAAACAAACCTGCTGTCAAAGCTGCTAAATCTAAAGTGCCCTGTAAGCCGCCAGAACAGCGCACCCTGTGGGAGAActtcagacagacagggaagAAAGAAGACAAAGCCACAAGTTAAAACATACGAAACCCACTGGATTGCTTGATGGCAAAAGAACAAAGAGGGCTTTTGTTGTTTCTGTGCATACCGAGCCAAAGCTGTCCGCTTACTACAATGGTTGATGGTGGAACAAATGGAAAAACTGACTGGAGAAAATCACTTCAAACATCCTCTTTGGTGAAGCATAAAGGGAAACAACCACAGCGCAAATGGATTATTCCTGCAACAGTTCATGGAAGCTTTAGAAAGGTGAGGGAAACGTACGAAGACAATACCTGCACATCTGGAAGTCACACATTACTACTTCAGCCTGATGCAGCACTTAAATCAGGGTGAGATGGGTTTGTACTTTGCCTAATAGTTTAGTTCTTCTAGACTACCTCGATTGGCCTTGTCAGTCAGTTTAAAATCCGTAAACTTCAATCTCTCCCCTTTTTGATTATTCCAAAAACATGCACTTCAATTTATTGCACCATTATCAACACATTCACTGTTTATTTCAGGAATAACAAACAGGCATAAAGAGTATTCCTTAACAAACGTCTGTTTTTGTGGTTATAAatggtaaaaatatatatataattgtgtGCAGATTTCTCTCTTATTCCACTTTCAACCCGGCAGCTTGATTTTTAGTCATCAATGTGTGGTAATAGTGGTGACTAGGTTATGTATAAAGGTTTGTTACCGAGAAAATGTTATGTACTTCTGTTCTGAATTTACTTCAAGGTTTCGATAAGCTCTAAAGAACATTTTTATTGGAGGTAAATTAATGTGCAAATAAATGTTACATTTCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112893 lncRNA downstream 143192 10537831 ~ 10540661 (-) True G83854
TU112852 lncRNA downstream 251709 10389244 ~ 10432144 (-) False G83826
TU112840 lncRNA downstream 311674 10368773 ~ 10372179 (-) True G83819
TU112839 lncRNA downstream 311674 10368863 ~ 10372179 (-) False G83819
TU112788 lncRNA downstream 315971 10363800 ~ 10367882 (-) False G83786
TU112914 lncRNA upstream 20435 10706418 ~ 10713107 (-) False LOC120564603
TU112966 lncRNA upstream 137303 10823286 ~ 10900547 (-) False oaz2a
TU112963 lncRNA upstream 214673 10900656 ~ 10913212 (-) False oaz2a
TU112979 lncRNA upstream 238520 10924503 ~ 10925018 (-) True G83911
TU113034 lncRNA upstream 324879 11010862 ~ 11011238 (-) True G83941
XM_039809213.1 mRNA downstream 21175 10643916 ~ 10662678 (-) True scamp2
XM_039809208.1 mRNA downstream 51068 10546775 ~ 10632785 (-) False map1ab
XM_039807485.1 mRNA upstream 7901 10693884 ~ 10705324 (-) True LOC120563355
XM_039809736.1 mRNA upstream 20236 10706219 ~ 10714845 (-) True LOC120564603
XM_039809735.1 mRNA upstream 31182 10717165 ~ 10879648 (-) True LOC120564602
XM_039809740.1 mRNA upstream 213451 10899434 ~ 10913217 (-) True oaz2a
XM_039808193.1 mRNA upstream 243985 10929968 ~ 10934791 (-) True ppib
XR_005640086.1 other downstream 21175 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 251709 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 503856 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 595253 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 610431 10073293 ~ 10073422 (-) True LOC120564824
TU113209 other upstream 1202044 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1455540 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 2544634 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 2887848 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 3345121 14031104 ~ 14033215 (-) False zgc:77752

Expression Profile