RNA id: XM_039807514.1


Basic Information

Item Value
RNA id XM_039807514.1
length 2543
RNA type mRNA
GC content 0.45
exon number 15
gene id lctlb
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 18041628 ~ 18047840 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACAGCAGGGACAACTCTGGAGAAGGGTGGTGCTACAACAGGCGACGTACAATAGAGATTGCACCAatagatatattcagctttctaCGTGATCTGCTGTTCCAGGAGAGCAGTGCACTCAGGGATTCAagctcagcacacacacacctgctgcaAATGAATTCTTCATAAGATACACAGACGTCAGTGAGTGACTGGAGCCTAACCCGACAGTGACTGTGCTGCAGGCTCAGGAGTACCATGCTGCCCAGCTGTGCATTCAGTGTGtgccatgtgtttgtgttggtgctGTGTCTGTCTTCGGCTGAGGACATCGACTGGACAAAGAACGACCACAGCTCCTTCTATTATGGCACTTTTCCAGCTGGATTTTCATGGGGTGCCGGAAGTTCAGCCTATCAAACAGAAGGAGCCTGGGACAAAGATGGAAAAGGACTGAGCATCTGGGACGTGTTCAGTCATAAGAAAggcaaaatacaacaaaatgaCACCGGGGACTCCTCTTGTGAGGGATACCACAAAGTCAAGgATGATGTTTCTCTGATGAAGGAGCTGAAGCTTAACCACTATCGCTTCTCCATATCCTGGCCTAGGCTCATCCCCACTGGCATAAAGTCTGACCATATAAATGAAAAAGGAATCCAGTACTATGATGGACTGATTGACCAGCTGCTGGAGAGCAAGATCACTCCCGTTGTAACTTTGTATCACTGGGATCTTCCACAGGTCTTACAGGAGAAATATGGTGGATGGCAGAATATAAGCTTGGTCAATCATTTCAATGAATTTGCTAACCTGTGCTTTGAAAGATTTGGCAACCGAGTCAAGTACTGGATGACTTTCAACAATCCATGGTCTGTAGCAGTTGAAGGCTATGAGACTGGCGAGCATGCTCCTGGACTGAGACTGAGAGGAACAGGGGCATACAGAGCTGCCCATCACATAATCAAGGCACATGCTAAAGTTTGGCATACTTATGACACACAATGGAGGGCAAAACAAAAAGGTCTGGTTGGCATCTCTCTGTCTGGAGATTGGGGAGAGCCGGTGGATATGAGCAACCAGAAAGACATTGAAGCAGCTGAGAGATACGTCCAGTTCTACCTGGGCTGGTTTGCCACACCCATCTTTCACGGAGACTACCCTCAAGTGATGAAAGACTTCATTGGAAGGAAGAGTGTCCAACAGGGCCTTGGGACGTCTCGCCTGCCCACATTTTCCACCCAAGAGAAGAGCTACATCAAGGGCACCTGTGACTTCCTCGGCATCGGCCATTTCACCACCCGCTACATCACCCAAAAGAACAACCCATCAGGtcgaagcagcagcagctactTCACTGACCGTGACCTGGCGGAGCTGGTTGACCCTCGATGGCCTGACCCCGGGTCTGAGTGGCTCTACTCCGTGCCTTGGGGTTTCAGACGTCTGCTCAATTTTGTCAAGACTCAGTATGGAAACCCAATGATTTATGTTACCGAGAATGGAGTCTCTGAGAAGATGTTATGCACAGAGCTGTGTGATGACTGGAGGATACAGTATTATAAAGACTACATCAATGAGATGCTGAAAGCTATCAAAGATGGAGTTAATGTGAAGGGCTACACCGCATGGTCCCTGCTGGACAAGTTTGAGTGGGATGAAGGCTACTCCGAGAGGTTTGGCTTGTACTATGTGGACTTCAGGAACAAAAACAAGCCTCGCTATCCCAAAGCTTCTGTTCAGTTTTACAAACGCGTCATCAGCTCCAATGGATTTCCCAATCAGAGAGAGGTTGAGAACTGGAGGAGGAAGGCTATTGAGACCTGTTCCTCAAGCAACCAGCTCCTAGCTGCAGaGGAACAGCGGAGTACTGCTGCCAATATTCTAAGACTTATACATGACCCTTTGACCAGTCACATGGAGATGGTAACTGAGATCGTTGTTCCCACTGTGTGCACACTCTCTATTTTGCTCAGTGCCGTCTTCCTTATGTTCCTGCTGCGGAGGCGGAACTAGACAGTGTGCTTGtttacaatcacacacacaccttttcttTCATGGATCATGTGTGaacataaatacattatttgAACTGAATTTCGATGGAATTAGTAACTTCATTCAGTTGATGTGCATACAGTATTTGCTGTAAAAACATTGGTTTAGCCTTTTAAAAATCAATTTACTACCAGACACTCAAAGTCAGTGTGGATAGACCTGCAACATGTTGGATTTTCTTATTACAATATTGTTGTGGAATATTACCATTGCGAACAGCCCTTGTGATCTATTGTTTTAAGCTGTTCAGcaaaaaaacttttcaaaaTCTTTCAACTGCTatattgaacttttttttttttaaatctgcaaATGTCATAATAAAGATGCAATTAGAAAAACCATGACAGTGTCACAGAACATAGATTCAAAAGGACTGAAAGTTGTTTATTCAAAAGATTTgacaaaaatacagtatattaacaGAAACGTATACTATGTGATGTAGTAATTGCAGATGATAATaccaaaaatgacaataaacacCTCCTTTGTTGTTTA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115589 lncRNA downstream 24854 18016107 ~ 18016774 (-) True G85815
TU115571 lncRNA downstream 84999 17893907 ~ 17956629 (-) False dennd4a
TU115567 lncRNA downstream 149161 17888867 ~ 17892467 (-) True G85806
TU115568 lncRNA downstream 149161 17891757 ~ 17892467 (-) False G85806
TU115552 lncRNA downstream 176202 17861719 ~ 17865426 (-) False ppcdc
TU115714 lncRNA upstream 295702 18343542 ~ 18344341 (-) True G85910
TU115832 lncRNA upstream 566748 18614588 ~ 18627153 (-) True syt7a
XR_005640064.1 lncRNA upstream 627423 18675263 ~ 18677985 (-) True LOC120564122
TU115929 lncRNA upstream 709212 18757052 ~ 18761076 (-) True G86064
TU115939 lncRNA upstream 719655 18767495 ~ 18769138 (-) True G86072
XM_039807512.1 mRNA downstream 5278 18032528 ~ 18036350 (-) True LOC120563379
XM_039808190.1 mRNA downstream 9434 18030948 ~ 18032194 (-) True LOC120563782
XM_039809893.1 mRNA downstream 35098 17932205 ~ 18006530 (-) False megf11
XM_039807521.1 mRNA upstream 264 18048104 ~ 18050749 (-) True snapc5
XM_039808960.1 mRNA upstream 123973 18171813 ~ 18174965 (-) True aagab
XM_039809857.1 mRNA upstream 373852 18421692 ~ 18436931 (-) False kif23
XM_039809855.1 mRNA upstream 373852 18421692 ~ 18436931 (-) False kif23
XM_039809856.1 mRNA upstream 373852 18421692 ~ 18436931 (-) False kif23
TU115583 other downstream 5352 18031008 ~ 18036276 (-) True G85813
TU115584 other downstream 5352 18031008 ~ 18036276 (-) False G85813
TU115585 other downstream 5352 18031008 ~ 18036276 (-) False G85813
XR_005640156.1 other downstream 6629 18034901 ~ 18034999 (-) True LOC120564819
XR_005640157.1 other downstream 7022 18034508 ~ 18034606 (-) True LOC120564820
XR_005640159.1 other upstream 384200 18432040 ~ 18432135 (-) True LOC120564822
TU115790 other upstream 451488 18499328 ~ 18502866 (-) True tmem258
TU115791 other upstream 451488 18499328 ~ 18502866 (-) False tmem258
TU115837 other upstream 597686 18645526 ~ 18648084 (-) False syt7a
TU116123 other upstream 959356 19007196 ~ 19010916 (-) False G86194

Expression Profile