RNA id: XM_039807594.1


Basic Information

Item Value
RNA id XM_039807594.1
length 1972
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120563437
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23900293 ~ 23904797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATTCCTAAACGGCACCGTGAAAACTGCTCACGGACATGAAGTCTCTAATCCTTCATATCCAGGATGTCTTTGTCAACAATAATGTGTTCTCTGCGTTAACATCAAATAAGTGAGAATAAAGCAGAGAAGCAGTTCCAGAGACCACCCCACTGACTTGTCCATCAAGGCCTCAGCCAGACAGCACTTCAGATGAACTCCTCCTCAACACCTTCAAGGCTTTTGAACTACACCCCCTGCCTCCACTGTCCTATGCTACCTCCGCCCCAACTCAACCACCTGCCCAAAACCACTAGGACCTGAAAGCTGAGTCTCTCTCAGGCCTGACCACAAAATTACAGACCTGCTGTATATTAAAGGACCCGGCCCATGCGTCCTCTCCTGGTCACCTCCCTCTCTATGGGCCTTTATAAGTCTCTCACACAGAGGGGGCACTACTTTCCAAAGAGGGACCGTGCTCAAGCATCTGGAAAGCTCGCCGGTTTGCAAACGCACCTACTCATCCATAGCCGGGGATCTTCTGTCTAAACGCTAACCATGGACAACCATTCGTACAACTTCCCCTCAGACTGCACCCCGCTCACCAACTGTAAGTCTGCCCGTAAGCCGGCTGGATCCACCGTGGTGAACATGGGCAACACTGGCAAGAATGCTCCCCGGGACTATCTAGTCTGGTCGCTGTGCAACACCTTGTACGTTAACTTCTGCTGCCTGGGATTCATGGCTCTCGTCTACTCCATCAAGGCCAGGGACCAGAAGACTCAGGGCAACCTGCAGCTGGCCCAAGAGTGCTCAGACAAGGCTAAGTGGTACAACATCCTGGCAGCCGGCTGGAACCTGCTGATTCCACTTCTGGCCATCGTCCTGCTCGTCCTCCTGCTCATCCACCTGGGCACGTCCGAGGGCTCCTTTGACTTCTTCGGGGAGGACGGCTTCCAAAACTTCATGAAACTGTTCAGTTGGTAAACGGAGGCatagggagagaaaaaaacaaaacacacaaagtcaACCCATTCACACTAACCGGGAGAGGGTATTTGATAGGATGCAGCAGATGAGGGCTAACTGACATAATAGCTCTTAAGAATTTTAGCCAGTCTGAGCCAAGCAATAATGGAAATCTACATGGAAATCAGGACCTGCGCTGGGCTAAAATCTGCTCAGCACTCAAATGTCCTCTTTGTGGTGCACCAGTACTAATGCTGGTATTAAAAATTACAGACTAAAACAGGACATTCAACTACTATCTGACAgttacacatacaaaaaaaatggaTAAAACATAATACTTTTGGACCATTGAGCTAAAACTAATGCTAAAAGTTTTTGTTCAGTCAAAGCAACACAACGGTATAATACTTGTGTGCCAACACCTCATCAGAATTTGTAATGTGAGTGCTGTTGGAGATTAGTATTGGTGCATCCCTCGTTGTAATGTCAGTATTAGAGGGAGTTCAGCTTACACATGGCAGTCTCCCAGACGCGGTCAGTAGAAAGGTAAAGTTGATCAAAGACTGAACAGCCTGAAATGGCGACGAGGGGAACAAACAGACTGAAGAACGGCTGAGAGATTAAGCAAGCAGCTCCTCTGGGtcctttttgttgttatttattgtatttatgttgAGTAGAAATTTTGATGACAGCGGAAATCATAAGAACAGAGTACTGTGGAGCCAAAGTCTGAATGTCACGATAATGAGAAGCCACTTGACAAAGGACGATCAACCTTCACCTCCCATTGATAGTcacttatttttcttctttcagcagttttttttccttcttcttacTATTACAAAATACATCTGTTTagtcattatttacagtattttattagTATTGTGTTGTGTTAAGTATTCTAATTTTACATCCTGTTGTTGCTGACCTCTTGCGAGTGAGCTAAATAAACCAGATACTGTTAAGTCAGTATtgcattgaaaaaataaataagtctttattttctttttca

Function

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06566 IFITM; interferon induced transmembrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118056 lncRNA downstream 162788 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 270008 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 482440 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 661761 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 675652 23198588 ~ 23224641 (-) True LOC120563856
TU118160 lncRNA upstream 133087 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 137661 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 454196 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 679561 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 688564 24593361 ~ 24593577 (-) True G87755
XM_039809456.1 mRNA downstream 6697 23880291 ~ 23893596 (-) True LOC120564460
XM_039809958.1 mRNA downstream 166638 23696033 ~ 23733655 (-) True ptdss2
XM_039809960.1 mRNA downstream 167996 23699160 ~ 23732297 (-) False ptdss2
XM_039809959.1 mRNA downstream 167996 23700406 ~ 23732297 (-) False ptdss2
XM_039809957.1 mRNA downstream 167998 23696033 ~ 23732295 (-) False ptdss2
XM_039808436.1 mRNA upstream 4372 23909169 ~ 23911818 (-) True LOC120563922
XM_039808433.1 mRNA upstream 22631 23927428 ~ 23937460 (-) False polg
XM_039808434.1 mRNA upstream 22631 23927428 ~ 23937399 (-) True polg
XM_039808435.1 mRNA upstream 22631 23927428 ~ 23936347 (-) False polg
XM_039809882.1 mRNA upstream 59508 23964305 ~ 23974244 (-) True rhcgb
TU118073 other downstream 159103 23738982 ~ 23741190 (-) True G87624
TU117944 other downstream 401634 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 1194097 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 1194097 22691048 ~ 22706196 (-) False parvg
TU117419 other downstream 2160965 21735006 ~ 21739328 (-) False LOC120564778
unassigned_transcript_379 other upstream 305 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 4372 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 4372 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 11037 23915834 ~ 23915906 (-) True trnar-acg_18
TU118279 other upstream 1159955 25064752 ~ 25065488 (-) True G87803

Expression Profile