RNA id: XM_039807601.1


Basic Information

Item Value
RNA id XM_039807601.1
length 2023
RNA type mRNA
GC content 0.50
exon number 2
gene id rag2
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 24161577 ~ 24220343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCATCATAGGGGAAGCTGAGCCAGGGAGCCAAGCTGAGAaaACAGCTGCCGGGAAATGACCCTGCAACCATTAACTCCAGTGAACTGTGCAGGCCTCATACAGCCGGGcttctctctgctgcagctCGATGGGGAAGTTCTCCTGTTTGGCCAGAAAGGTTGGCCAAAGCGCTCATGTCCTACGGGAGTGTTTGGCGTTCGCATTAAATGTGGTGAGATGAAGTTGAGGGCCATCTCTTTCTCCAATGACTCATGCTACCTTCCTCCATTACGTTGCCCAGCTGTTTGCCGCCTTGACCCCTATGACGGGCTTCCAGAGAGTTATCTCATCCACGGTGGCCGCACCCCAAATAACGAGATCTCATCGAGCCTGTACCTGCTGACCATGGATAGCCGTGGCTGCAATCGTAAACTGACCCTGTGCTGCAAAGAGAAAGAACTAGTGGGAGAAGTGCCAGGGGCCAGATACGGCCACACCATGAGCATAGTTCAAAGCCATGGGAAGACAGCTTGTGTATTGTTTGGTGGTAGATCCTACATGCCTGCGGGAGAGCGGACCACGGAGAGCTGGAATAGCGTGGTCGACTGTCCCCCCCAGGTGTTCCTGTTTGACTTGGAGTTTGGTTGCTCCTCTGCTCACACTTTACCTGAGCTCAGCGACGGACAGTCTTTCCATTTGGCCCTTGCCAGAGAGGACTGTGTCTACTTCCTCGGGGGTCACTCGCTCACCTCTGACTCCCGCCTCCCTCGGCTCTTCCGCCTGCGTGTTGAGCTTTTGCAGGGCAGCCCCTTGCTTTCCTGTGAGACTCTTGAAACTGGCATATCCATCTCTAGTGCCATAATCAGCCGTACAGGTCCTACCCACAGATATATCATCTTAGGTGGGTATCAGTCAAACTCTCAGAAGAGGCTGGAGTGCAGCACTGTGATTCTGGATGAGAAAGGGATCCACTTTGAGCCCTTAGAAGCACCTAAGTGGATCCCAGATATCATCCATAGTCGCACTTGGTTTGGCGGCAGTGCCGGGGAGGGAAGCATCCTACTTGCTGTACCTACTGAGGGAAGGCCGTCCCAAGCAGATATGCATTACTTCTATCAGGTGAGCTTCCAGGCAGAGGGAGACGCCAAAGAGAAGGAAGTAACCCAGGGCTGCAGCCAGGAGTCAACAGAATTCGACGACTCCACTCCTCTCGAAGACTCTGAGGAGCTCTACTTTGGTCGTGAGCCGCATGAGCTGGAGGACAGTAGTGATGGAGAAGGGGGTAATTACaatgaggaggatgaggaggacgaATCACAAACGGGCTACTGGATCAAATGCTGCCTGGGCTGTCAGGTGGACCCCAACACATGGGAGCCATACTACTCCACTGAGCTCCACCGGCCAGCCATGATCTTCTGTTCCAGAGGGGAAGAGGGACACTGGGTCCATGCCCAGTGCATGGAGCTGTCTGAGACTCTGCTGCTCAGGCTCTCTCAGGGCAGCAAAAGGTACTTCTGCCACGACCACGGAGGCCTGCCCTACCAGGAGATGACCCCACCTCGACAGGTCATGTCTCCGAAGCGTATCCCCATGAAAGTTAAGGACAGGAAAACTCCGACAATCAAGATATCCCCTGccaaaaaaagcttttttagGAGGCTTTTCGACTGAATCCAGTTTATGATGCGTGTCGATCACTGTTAAGAATGCTGTGTGTATTCAGCATGTTTCTTGTTTATATTCAGTCAAACATTTTGtgaagaaaataaacaatagaATTGCAACCTTTCCATTATGATTGTACCTTGTCATGGAATATTGTGGAATATTTTAGCAAGTCTGTCTGCAATGTTTCTAGTTTGTGTTTTGCCAGCTGTATAACAGTTTATTGTAATTTTGGATTCATCTTTATTTCTTAACACTTCCTTCCATGGCCAGATGGAACTGAATTCTTGCTACATTTCTTTTTACCATTCAAATGATGACTAGTGAATGAAAAATACCCAATATGCTGATCTGTTCTaaattaaaacaacaa

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118158 lncRNA downstream 117838 24042458 ~ 24043739 (-) True G87693
TU118160 lncRNA downstream 121676 24037884 ~ 24039901 (-) True G87695
TU118056 lncRNA downstream 424072 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 531292 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 743724 23415763 ~ 23417853 (-) False LOC120564579
TU118202 lncRNA upstream 165816 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 391181 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 400184 24593361 ~ 24593577 (-) True G87755
TU118227 lncRNA upstream 412282 24605459 ~ 24605825 (-) True G87758
XR_005640114.1 lncRNA upstream 412720 24605897 ~ 24606556 (-) True LOC120564545
XM_039809219.1 mRNA downstream 33842 24044129 ~ 24127735 (-) True furinb
XM_039809023.1 mRNA downstream 145437 24008436 ~ 24016140 (-) True unc45a
XM_039809025.1 mRNA downstream 153222 24005568 ~ 24008355 (-) False LOC120564204
XM_039809024.1 mRNA downstream 153222 24005568 ~ 24008355 (-) True LOC120564204
XM_039807510.1 mRNA downstream 173046 23986366 ~ 23988531 (-) True gdpgp1
XM_039808218.1 mRNA upstream 190584 24383761 ~ 24388249 (-) True LOC120563810
XM_039809943.1 mRNA upstream 572239 24765416 ~ 24894803 (-) False LOC120564736
XM_039809945.1 mRNA upstream 572239 24765416 ~ 24892599 (-) False LOC120564736
XM_039809944.1 mRNA upstream 572239 24765416 ~ 24818459 (-) True LOC120564736
XM_039808847.1 mRNA upstream 1069064 25262241 ~ 25278700 (-) True slc1a2b
XR_005640032.1 other downstream 245375 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 245375 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 245671 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 256404 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 420387 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 871575 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 1403176 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 2480666 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 2820060 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 3030875 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile