RNA id: XM_039807619.1


Basic Information

Item Value
RNA id XM_039807619.1
length 506
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120563453
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 2330224 ~ 2332479 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTGATAAACAGTTGACGCAAACAGACAGTTGACTTGTCTTTTAACTGCAGCGGACATTAATACAATGGCAACCATGCTCGGAGCATACGGTCCTGTAAGGGTTGCCAATAAGGAAACTCAGGAGATTTGTGATCAGGTGAAGAACCAAGTGGAGGAAATAACAGGAGCAAATTATCTGGAATACAAAGCAGTTGAATCCAGGTTTCAAGTTGTGGCAGGAATAAACTACCTTATCAAGCTTCATGTTGGAGGAGATGACTACATTCATCTGGAAATCTTCCAAGAACTGAGGAACGGAAGAAAGAATTTGCTGACTAATGTACAGGATCATCAGACCAAAGTCAGCCCCCTCGTACCTTTTTAGAAACTGATCCCAGAACCAGTTTCACCAGTAAAATACTTAAAGGCTGCAGTCCCATGTTAAAATCTTCTGcttctttattctgaaatgaTTTAACATTGATTTTGAATGTTTTAAAGgcgccctgccacacaaaaccgtt

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639961.1 lncRNA downstream 32176 2296238 ~ 2298048 (-) True LOC120563461
TU110016 lncRNA downstream 32423 2296820 ~ 2297801 (-) False G81695
TU110014 lncRNA downstream 32705 2296820 ~ 2297519 (-) True G81695
TU110015 lncRNA downstream 32705 2296820 ~ 2297519 (-) False G81695
TU110018 lncRNA downstream 32705 2296820 ~ 2297519 (-) False G81695
TU110025 lncRNA upstream 7926 2340405 ~ 2342555 (-) True G81700
TU110042 lncRNA upstream 210035 2542514 ~ 2542867 (-) True G81716
TU110043 lncRNA upstream 210035 2542514 ~ 2542867 (-) False G81716
TU110044 lncRNA upstream 216480 2548959 ~ 2549880 (-) True G81717
TU110046 lncRNA upstream 243091 2575570 ~ 2576163 (-) True G81718
XM_039807621.1 mRNA downstream 15957 2286119 ~ 2314267 (-) True LOC120563455
XM_039807622.1 mRNA downstream 15957 2289532 ~ 2314267 (-) False LOC120563455
XM_039807624.1 mRNA downstream 15957 2313346 ~ 2314267 (-) False LOC120563455
XM_039807614.1 mRNA downstream 49278 2279227 ~ 2280946 (-) True LOC120563449
XM_039807625.1 mRNA downstream 75973 2253284 ~ 2254251 (-) True LOC120563456
XM_039807617.1 mRNA upstream 24691 2357170 ~ 2358088 (-) True LOC120563451
XM_039807620.1 mRNA upstream 33851 2366330 ~ 2367290 (-) True LOC120563454
XM_039808535.1 mRNA upstream 376037 2708516 ~ 2723969 (-) True mphosph6
XM_039808116.1 mRNA upstream 419827 2752306 ~ 2819413 (-) True LOC120563733
XM_039808921.1 mRNA upstream 725105 3057584 ~ 3067921 (-) True fem1b
TU109967 other downstream 217375 2110621 ~ 2112849 (-) True G81655
TU109743 other downstream 602483 1725152 ~ 1727741 (-) False ambra1b
TU109845 other downstream 665332 1613394 ~ 1664892 (-) True G81576
unassigned_transcript_366 other downstream 769499 1560654 ~ 1560725 (-) True trnae-uuc_58
unassigned_transcript_365 other downstream 770135 1560018 ~ 1560089 (-) True trnae-uuc_57
unassigned_transcript_368 other upstream 112280 2444759 ~ 2444830 (-) True trnak-uuu_14
unassigned_transcript_369 other upstream 184883 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_370 other upstream 198693 2531172 ~ 2531243 (-) True trnak-uuu_15
TU110061 other upstream 337836 2670315 ~ 2678513 (-) False G81726
TU110074 other upstream 352419 2684898 ~ 2685240 (-) True G81738

Expression Profile