RNA id: XM_039807620.1


Basic Information

Item Value
RNA id XM_039807620.1
length 527
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC120563454
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 2366330 ~ 2367290 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAAGCAGACAGTTGACTTCTCTGTTAACTTCAACGGACAGTGACACAATGGCAACCACGGACGGAGAATACGGTGCGATAACGGACGCCACTGAGGACACTGAGGCGGTTTGTGATCTGGTGAAGAAAACAGTGGAGGAAAAGACAGGAAAGAAGTATGTGGAATTCAAAGCAGTTAAATACAGGCAGAAAGATGTTGTGGGAGGAACCAACTACCTCATCAAGGTTCATGTTGGAGGAGAtgactacatttatttgacagtcTTCGAAGATATCGGAGAAGAGGTTTTCCTGCATGATGTACAGGATCATCAGACCATAGACAGCCCCCTCGTACCTTTTTAGAAACTGATCCCAGAACCAGTTTCAAGAGTAAAATACTTAAAGGCTGCAGTCTCATGTTAAAATCTTCTGcttctttattctgaaatgatttaacattgattttcaatgttttaacgCTGAGAGATGAAGAGATTTGGTGGAATGCAATATCTTTTATCCCCAAATAAATATTCTGCCACTA

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110025 lncRNA downstream 23775 2340405 ~ 2342555 (-) True G81700
TU110016 lncRNA downstream 68529 2296820 ~ 2297801 (-) False G81695
TU110014 lncRNA downstream 68811 2296820 ~ 2297519 (-) True G81695
TU110042 lncRNA upstream 175224 2542514 ~ 2542867 (-) True G81716
TU110043 lncRNA upstream 175224 2542514 ~ 2542867 (-) False G81716
TU110044 lncRNA upstream 181669 2548959 ~ 2549880 (-) True G81717
TU110046 lncRNA upstream 208280 2575570 ~ 2576163 (-) True G81718
TU110052 lncRNA upstream 216412 2583702 ~ 2591676 (-) True G81721
XM_039807617.1 mRNA downstream 8242 2357170 ~ 2358088 (-) True LOC120563451
XM_039807619.1 mRNA downstream 33851 2330224 ~ 2332479 (-) True LOC120563453
XM_039807621.1 mRNA downstream 52063 2286119 ~ 2314267 (-) True LOC120563455
XM_039807622.1 mRNA downstream 52063 2289532 ~ 2314267 (-) False LOC120563455
XM_039807624.1 mRNA downstream 52063 2313346 ~ 2314267 (-) False LOC120563455
XM_039808535.1 mRNA upstream 341226 2708516 ~ 2723969 (-) True mphosph6
XM_039808116.1 mRNA upstream 385016 2752306 ~ 2819413 (-) True LOC120563733
XM_039808921.1 mRNA upstream 690294 3057584 ~ 3067921 (-) True fem1b
XM_039809713.1 mRNA upstream 739800 3107090 ~ 3108199 (-) True LOC120564583
XM_039809710.1 mRNA upstream 745016 3112306 ~ 3130047 (-) False LOC120564581
TU109967 other downstream 253481 2110621 ~ 2112849 (-) True G81655
TU109743 other downstream 638589 1725152 ~ 1727741 (-) False ambra1b
TU109845 other downstream 701438 1613394 ~ 1664892 (-) True G81576
unassigned_transcript_366 other downstream 805605 1560654 ~ 1560725 (-) True trnae-uuc_58
unassigned_transcript_365 other downstream 806241 1560018 ~ 1560089 (-) True trnae-uuc_57
unassigned_transcript_368 other upstream 77469 2444759 ~ 2444830 (-) True trnak-uuu_14
unassigned_transcript_369 other upstream 150072 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_370 other upstream 163882 2531172 ~ 2531243 (-) True trnak-uuu_15
TU110061 other upstream 303025 2670315 ~ 2678513 (-) False G81726
TU110074 other upstream 317608 2684898 ~ 2685240 (-) True G81738

Expression Profile