RNA id: XM_039807634.1


Basic Information

Item Value
RNA id XM_039807634.1
length 1527
RNA type mRNA
GC content 0.48
exon number 9
gene id twf1a
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22013911 ~ 22029073 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTCGATGTAGTCCACTTCCTGCTTCTCTGCCCTGGTTTCGTCTCAACAGCTGCATCAGCCCTTTATCCGACGAAAGACACAATGTCACATCAAACGGGCATTCAAGCGGGTAACGATGTGAAGGACGTCTTTGCCAGTGCCAGGAGCGGAGACCAATATCGGGTCTTAAAGGTCATCCTTGAGGGTGAGCAGCTGACTATGGGTCCCACCAGGAAAGCATCAAAGAAGTGGGACCAGGAGTATGATTCCTTAGTGCTGCCCCTCCTCGAGGATGACGTGCCCTGCTATATTCTGTACCGGCTGGACTCCACTAACAACCAGGGCTACGAGTGGGTCTTCCTGGCCTGGTCACCAGACCACTCTACAGTGCGACATAAAATGTTATATGCTGCTACCAGAGCCACACTGAAGAAAGAGTTTGGAGGCGGGATCATCAAGGATGAGATTTTCGGTACCACAAAGGATGAAATGACTCTCAGTGGATACAAGAAATATCTGACCTCGCAGGCTGCTCCACTGCCCCTCACTGCTGCAGAGGAGGAACTGAGACAGATTAAACTAAATGaggtgcagACGGACATCAGCGTGGATACCAAGCAGCAGACTCTGCAGGGAGTGGCCTTCCCTATTCACAAAGACGCTGTTGCAGCACTTGAACGCTTTAGGGACAAAAGAATCAATTACGTACAGCTGGAAGTAGACGCTTCACAGGAGCTGATTCGGTTGTGCAACACTGAGCCAACAGAGGTTAAAGACCTGCCAATGAGAATCCCTAAAGAATCTGCACGCTACCACTTCTTCCTCTACAAACATTCCCACGAAGGCGACTACTTAGAGTCCACAGTCTTTATTTACTCTATGCCCGGGTACAATTGTAGTATCCGAGAGAGGATGCTGTATTCTAGCTGCAAAAATCCCTTGGTCGACATGGTGGAAAACAATCTCCAGATTGAGATTGAGAAAAAGTTGGAGATTGACAATGGTGATGAATTGACCGGTGATTTCCTGTACGAGGAGGTGCATCCCAAGCAGCATGCACACAAGCAGGCCTTCGCCAAGCCCAAAGGCCCTGCTGGGAAGAGGGGTTACCGCCGCATCACCCGACCCCccgcagagggagaggaggaagattAAACAGACCTCAGCACCCGACCACCACCTCCACCCCGAGCAcgtggtgggggggggaaaaTCATATTTGACACGCTTGTTTAAAAGAATAAGACAACAGCTTCAAATTCCCACAAAGTACCCCAGAGACCCAACTATGCACGCCAAGGACAACTGAGCAATGACACACTTCAGAATTTCCATTTGTAGCTTGCCAAATGGAAGCATATTTATGTATGTTAGTACAGTCAAATTTATTTCACCATGATTCAAAGAGGCCCTATCAAAGTCAAGCTTGAGGTTTTTCCATTGTTGCCAGCTCTAAGACTTTAAAGATGTTAGTGTGACTAATGTGAACTTGCGCCAATATGATAAAATCCCCCCCATTTTGAGTTCACATGCTCGAATTCTTAA

Function

GO:

id name namespace
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117515 lncRNA downstream 5516 22005499 ~ 22008395 (-) True G87232
TU117411 lncRNA downstream 288253 21724923 ~ 21725658 (-) True G87148
TU117376 lncRNA downstream 464052 21546658 ~ 21549859 (-) True G87123
TU117371 lncRNA downstream 501383 21486532 ~ 21512528 (-) True G87120
TU117350 lncRNA downstream 547665 21462705 ~ 21466246 (-) True G87107
TU117537 lncRNA upstream 41885 22070958 ~ 22082538 (-) True G87249
TU117542 lncRNA upstream 76807 22105880 ~ 22106255 (-) True G87254
TU117622 lncRNA upstream 258871 22287944 ~ 22355196 (-) True G87320
TU117629 lncRNA upstream 321319 22350392 ~ 22366978 (-) False LOC120564428
TU117635 lncRNA upstream 358922 22387995 ~ 22390216 (-) True G87329
XM_039807628.1 mRNA downstream 52844 21874973 ~ 21961067 (-) True LOC120563465
XM_039809867.1 mRNA downstream 220030 21765682 ~ 21793881 (-) False prickle1a
XM_039809868.1 mRNA downstream 220030 21765682 ~ 21793881 (-) True prickle1a
XM_039809869.1 mRNA downstream 235161 21765682 ~ 21778750 (-) False prickle1a
XM_039810025.1 mRNA downstream 274567 21735384 ~ 21739344 (-) False LOC120564778
XM_039809654.1 mRNA upstream 62460 22091533 ~ 22211840 (-) True nell2a
XM_039809412.1 mRNA upstream 201858 22230931 ~ 22233599 (-) False LOC120564446
XM_039809411.1 mRNA upstream 201858 22230931 ~ 22233599 (-) True LOC120564446
XM_039809373.1 mRNA upstream 205663 22234736 ~ 22236927 (-) True szl
XM_039808211.1 mRNA upstream 210992 22240065 ~ 22265797 (-) True mov10l1
TU117418 other downstream 274583 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 274583 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 300357 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1134273 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1185308 20806882 ~ 20828603 (-) False LOC120564033
XR_005639990.1 other upstream 660088 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 661975 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 1465257 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1709909 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1876029 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile