RNA id: XM_039807722.1


Basic Information

Item Value
RNA id XM_039807722.1
length 1926
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC120563518
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20275877 ~ 20293118 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAAAATCAGATTGTTTTGAGCGTTTTTCGTACCCAGCTGATATCCTGTTCCTAAATATCTATACTACAGGGACCCAGAGACCATCAGTATCTGAGGGCAAGATGAAGAAAAGCAAGGCCCCCTTCTCTAGGAGAGCTGAAATCCAGCATCTGTACCAATGCTACACCTCAGAGCAGACCATTTTGCCTGCCTGCGCCCTCCTCAGGTTCCTCCACAAGGAGCAGATGGAGCTCACAGCAAATGAAGAGATGGCAGAGAGTTTGATTGATAGATATGAGATTGAAGAGACAGCCAGAGAAAGCAGGTCTATGACATTTGAAGGATTCCTCAGGTACATGGAGTCCAAAGACTGCTGCTTGTTTGACCAGGCCCACACATCTGTGTACCAATACATGGACCAGCCTCTCACCAATTACTTCATCTCCACATCACACAACACCTACCTGACTGGAGATCAGCTAGTAGGAAAGAGCCACCTGGATGCCTATTTTTGTGCTCTGAGGAAAGGCTGTCGCTGTCTGGAGATTGACTGCTGGGATGGGCCAGATATGGAGCCTGTAGTCTACCATGGCTACACCCTGACCACCAAGATATTCTTTAAGGACGTCATCACCACTGTGGAGCAACATGCCTTCGAGGTGTCTGCTTACCCGGTGATCCTGTCATTAGAAAACCATTGCTCCAAGGAGCAGCAGGAGGTCATGGCCCAGTACCTCATCTCAATCTTGGGGGAAAAGCTGCTGAGAACTCCCTTGGATCACCCAACTACTGGAGACCTCCCAAGCCCAAATGACCTGAAGTATAAGATCCTCATCAAGAATAAAAAGATAAAGCCTCCCATTAAGACGGAGGATGCAGCAGGGACACAGGCAGAGGAGAGTGTAGATGAGGGagaggatgatgaggaggatgatgaggaggatgaggatcaGCAAACCAAAGCAAAGTTCTGGTCAAAGGCAGGGTCAAAGACAAAAAAGAAGAAGGTGGCGGTGGCAGAGGCTTTATCTGACCTGGTCGTATACACCAGGTCTGTTAAGTTCATCAGCTTCAGTCATTCCAAGGAcaatcagaactactacgagAACACATCAATGGCAGAGAAGAAAGCTCGCAAGCTAGCCAAAGCCTCAGGTGCAGACTTTGTTCAGCACAACCAGAAGTTCCTCAGCAGGATTTACCCAGCAGGCTCGAGGACGTCTTCTTCCAACTACAACCCTCAGGAGTTTTGGAATGTTGGCTCACAGCTCGTGGCTCTCAATTTCCAGTCTCTGGGATTGCCTATGGACCTTAATGATGGCCGCTTCCAGGACAACGGCGGCTGTGGATACGTCCTGAAGCCGGCAGTGCTCATGTCCAGTCAGAGGAGCTTTGATCCCGGCTGCAGCCAGCACGGCCACAAACCCACACACCTGCTGCTAAAGGTGATCAGTGGGTCCAACCTACCCATCTCCAGGAGTGGCAAAGCTCTGGACCCCTTTGTCAGAGTGGAGATGCATGGGATTGCATCTGACTCCCACAggaaaaacacacatactgtgAAAAACAACTCTCTGAGTCCTCACTGGGATGCTGACATGAACTTCAGCATCAGCGTCCCTGAGCTCTGCCTCATCCGCTTCTGTGTCCGAGAGCAGACCGGCCTCCTCAGCAGTGAATTTGTGGGCCAGTACACCCTGCCCTTCACCAGCCTGAAGAAAGGCTACCGCTGGGTGCCTCTCCGGTCCCGAGACGGATGCAGCCTGGATCCAGCCTCCCTCTTCGTCTTTGTTTGGTATTCCTAAAAACAGCTCTCcatatctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116788 lncRNA downstream 11671 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 23351 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 34027 20241433 ~ 20241850 (-) True G86652
TU116708 lncRNA downstream 260065 20014338 ~ 20015812 (-) True G86605
TU116662 lncRNA downstream 452504 19821540 ~ 19823373 (-) True G86575
TU116815 lncRNA upstream 109626 20402744 ~ 20461823 (-) True G86686
TU116909 lncRNA upstream 405697 20698815 ~ 20699637 (-) True G86761
TU117040 lncRNA upstream 615271 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 809512 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 847389 21140507 ~ 21146513 (-) True LOC120563411
XM_039807729.1 mRNA downstream 18100 20256444 ~ 20257777 (-) True LOC120563522
XM_039807730.1 mRNA downstream 18330 20256444 ~ 20257547 (-) False LOC120563522
XM_039807725.1 mRNA downstream 19457 20255366 ~ 20256420 (-) True LOC120563520
XM_039807727.1 mRNA downstream 20539 20252799 ~ 20255338 (-) False bncr
XM_039807728.1 mRNA downstream 20661 20252799 ~ 20255216 (-) True bncr
XM_039809648.1 mRNA upstream 297184 20590302 ~ 20596104 (-) False LOC120564552
XM_039809649.1 mRNA upstream 297184 20590302 ~ 20593704 (-) True LOC120564552
XM_039809650.1 mRNA upstream 297184 20590302 ~ 20593499 (-) False LOC120564552
XM_039809647.1 mRNA upstream 310906 20604024 ~ 20610068 (-) True LOC120564551
XM_039807871.1 mRNA upstream 382318 20675436 ~ 20686687 (-) False hbp1
TU116763 other downstream 16618 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 592960 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 703955 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 887302 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 958467 19315435 ~ 19317410 (-) False arpp19b
XR_005640056.1 other upstream 513764 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 584593 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1419924 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1441888 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 1441888 21735006 ~ 21739328 (-) False LOC120564778

Expression Profile