RNA id: XM_039807740.1


Basic Information

Item Value
RNA id XM_039807740.1
length 4441
RNA type mRNA
GC content 0.46
exon number 15
gene id sema4ba
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16462555 ~ 16549024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGATTTGCTGCTGCCGTTGCTGCTCTAACTGGTGGTGATAGTGGTGGTGGATGCGTGCGTGCGGTGCCGGTTCAGCTGCATCCCTGGGCATCTCTCGGGATCCCTGCAGAGCTTCTTTTCCTCTGTCACCACTCGACAGAGCGCCGCTCCTACTGAGCACTGCAAGACATTGTCCTCTGCTGATAAAAGATCTCAGCTGAGACCCAGCGGTGCTGCGTACGCATGGAGGCTGATCGGTGGAGACTTTCTGTCTTGTTCTGAGGTCACAGGTCGTCATTCCAAACCAGCGTCATCTTCTGCAGGCCCAAAGGAGTGCTCCGACTTCCCCACAGTGCATAGGCCTTTCATTCAAGGAGCCTGGAGCtgcaggaaaagagagagaaaataaacagCTTAAAAAAGACGCTTTTCATGAATTCCCCACAAACCTGAAAGGCAAATACTGCAAGTTGGCTGGCGGTCCTGAGGAGGCATGTGGACAATGAGTATGGCTTGGCTCTGTCTCGCAGCCTACACTATCCTCCTTGTTGGTTCTTTTCATACAGCTGTCACGGAAAGCGATGTCACTCCACGCCTCACCTTCCCCTACAATGCGAAGGAGAGGACAACCAGAAGCTTCTCGGTCGGTGGAGTCTTCAACTacacctctctcctcctcagtaaaGAAGACAACACGTTGTACGTTGGCGCTCGGGAGATTCTCTTTGCACTCAACCTCACTGATATCAGTGCAGTCAAGCTACAAAGAAATCTCACGTGGAAAACtccagagaggaagagagacgaGTGCAGTTTCAAAGGCAAAGACCTGCAGACGGATTGCTTCAACTACGTCAAGATTTTACTACACATGAACAGCActcatctgtatgtgtgtggaacaTACGCCTTCAGCCCCACCTGTGCTTACATAAACACTGCAGACTTCTCCCTTGTCAAGAGTGATAATGGTGAGATTGTTACAGAAGATGGACGAAACCGCTGCCCTTTTAATCCTGAATACAAGTCCACTGCCATCATGGCTGATGGAGAGCTGTATGCTGGTACAGTCAGTAATTTCCAAGGAAATGAACCCATCATTTACAAGAGTCTAAGCCAAGGAACTGCTCTAAAAACAGAAAACTCCCTCAACTGGCTCCAAGACCCGGCATTTGTTGGCTCAGCCTACATACAGGAGAGCCTGCCCAAGGGCAACCTAGTGGGCGATGACGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAAGAGTTTGATTTCTTTGACAACACCATTGTGTCACGCATTGCTCGCGTGTGTAAGGGCGACATGGGAGGCGAGAGGGTTCTGCAGAAGAAATGGACAACATTCCTGAAGGCTCAACTCTTGTGCTCTCTGCCAGATGATGGATTCCCCTTCAACATTATCCAAGACATGTTTGTGCTGACACCCAGCCCTGATGATTGGAAGAACACTGTGTTTTATGGAGTCTTCACGTCTCAGTGGTATAAAGGTGCTTCAGGAAGCTCTGCAGTGTGTTCCTTCACTATGGACCAAGTGGAAAAGGCGTTCCATGGGCGATACCGTGAGGTCAACCGAGAGACTCAACAATGGTACACATACAACCATCCGGTCCCAGAGCCTCGGCCTGGAGTGTGTATCACAAATACTGCCAGGGAACAGGGCATCTCGTCCTCGCTGCACATGCCGGACAAGGTGCTGAATTTTGTCAAAGACCACTTTCTGATGGACAGCGTGATCCGCAGCCAGCCTCTTCTGCTCAAACGCAATGTTCGCTACACGCAGATAGCTGTCCATCGAGTCCAGGCAGCAAAAAAGGCGTATAATGTGCTCTTCATTGGCACAGATGATGGCAGACTTCATAAAGCCATTAATGTCAACAACAAGATGCACATCATTGAGGAGATGGCACTCttcagtgattcccaaccagtgCAACACATCGAGCTGGACACCAAAAAGGGCCAGCTTtatgtttcctctttctctgaaCTGGTGGAGGTCCCAGTAGCTAACTGCACTAATTATCAAAGTTGCGGGGAGTGCATCCTCTCCAGGGATCCTTACTGTGCCTGGAACGGGAGGAAATGTGTGGATGTCAGACAGGCTCCGCCAAACAATGCCTGGCAACAGGATGTAGACGAAGCAGACACATCAGCTATTTGCGACAAGACAGTGCCAAGCCCACGGTTGGCTAAACCTCTACCCACACGAATGTCTTTATGCCAGGTGATCATTATCCCAGCCAACACATTCAAAGTACTCCCTTGCAAGCTACGCTCTAATTTGGCTGAAAGGAAGTGGGAGTTCAGTGAGAGCGCAGGTCACTTCCATTACCCCAGCCCAGAGGGGGGGTTAGTAGTGGTAGCTCAAGCTGACAGGCAGGAAACCTACGAGTGCTGGTCAGTGGAGGAAGGCTTCAGACAGCTGTTGGCAAACTACTGTGTGAGGGGCGAGGCCAAGCATGAGAGCACCACCCTGACAGGCCGTTCACGTACGCCCCAGGTCTCCCAGGAAGAGTTTATCATCCTGCCAGGAGAGACCCGCTCACCGCAGATCAACACTAAGACCTACTGGAACGAGCTGATAGTGGTGTGTGCCCTCCTGGCATTTTCTCTGGTGGTCTTCTCTCTATTTGTGGTGTACAGGAACCGCGACCACATGAAGTCCATGCTCAAGGAGGGAGAGTGCCCCAACATGCAGCAGAAGAAGCCCAGAATTGTGGGGAAACCGGCTGAGAACTTGCCACTAAACGGCAACACAGTCACAGCGTCGGCGTCAGATCACAAGGGCTACCAGACCCTTAACGACAACTACATATGCAGCACTCCACCGCACGAGTGCTCGTCGCCCGACAACAGCAAGAGCTTCTCAGAGTCGGAGAAGAAGCCTCTGAACTTGAGAGAGAGCCACGTAGAGATTTCTCCCACATGTCCACGGCCAAGAGTCAGACTGGGCTCTGAGATTAAAGACTCCATAGTGTGAGGCCGGCTTCATGTTGTGTGGAGTGACATTTTAAACTGAAAGGAAAGAGTGCACTTGCTGAGAGAGACAAAACCCTATAAGAGGGAAGACTGAGGATCATTAGACTCTTCATGGAGAGACATTTCATTACACAGATTTTGCACTTGTTCTGTCCCTGTGGTCCATgttcatttcattttgtttccCTCTCACTCCCCCTTATTCAAGTGCATTCGAAGCACGCTGAAGAAGTTCCAGTTTGCCTTCAGACTTTTGACGCTACCACATACGGCTCACAGGAATGTAACAAGCGTAGAGGGGGTGTCACAACTATATGATTTCAGTGATTGGATTTCATAGCATTGCCACTCAGTCCGTCCATATAATCTACTGGTAATGCTTTAAAAGGCAGAGTGAAATTCAAACATGTTCCCACTACTGACTTACAGGGtttgctgttttattttaattctgtCATCTGGTAAGAGCCCACCCTTCGCTGAGGCTATGCACTATGTACTGTAGCAAGGCAAACACTCTCACCAGAATATACACTAACAATCCAGTGgcaggccaaaaaaaaaagtatactcATTGTTTAGGCTTGAATATAACACAGCAACATAGAAAGAATTAAGAGCAGAAGAGTTGTGCCAACAAACTAAAAAGGTCGTTTAAAAGAGACCATTATTTAgcattatttgttatttaagtGACCGGAAACACAAAGAAGGAATCACCTCAGTGGAAATGTTGTAGAAACCCTTACCACCTCAATCACTACACACCAAAAACATGAACATTATATAGTTATGAATGAAGACACTATGCTTTTTCTAAAGTATTGGAATTATTAGTAGATAGAGATATTCCTCTGTGGAAGTCTGACTTTCAACAGGTGTTTCTTTCACCAAATGTTGTAAAGGGAAAAATCTCATTCCAGGTATTATCATGCTGTTCTTCATGAGATAGGCAGTCTATGCAAAGCAAATAATGTGAAGTGGGGTAAACACCAAGAACACCTCACCTCGAGACTGAGTAAGCACAAAGGTGTTGGCGCTGTTAATTACTTTAGGATCAGTggcactgcaaacacacaccaacacacacattcgCTCTCATTACACTAACTATAAGTATGCAAGAGATTTTAGCCATTTTGGTGTATTTTAGTGTGGAAGATTGACCAATTGTTTCTTTTACAGAGAGACATTTTTCGTAGTCATTCTTTAATGTTACAAATATCTATCATCAATTTTCACAAagggaaataataataaatatttaaatactaCACCTATTCATAATCTGATTTAAATAACACACATCTGTATATCCTCAACTTTGATACACATATTAATTGATGAGTGTTAACGAAGGGTAGAAAATGCCTCTTTCTTgcttaaatggttttaaaggcAACCATAAAAGCAATAATTTTCATTCTCATCCAGTAATAAACAGAATTTGTAATTGT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114905 lncRNA downstream 37 16461562 ~ 16462518 (-) True G85319
TU114898 lncRNA downstream 89636 16371001 ~ 16372919 (-) True G85312
TU114820 lncRNA downstream 185143 16275651 ~ 16277412 (-) True G85253
TU114816 lncRNA downstream 204320 16257975 ~ 16258235 (-) True G85250
TU114811 lncRNA downstream 267953 16188853 ~ 16194602 (-) False st8sia2
TU114919 lncRNA upstream 19206 16528607 ~ 16528849 (-) True G85328
TU114923 lncRNA upstream 44005 16553406 ~ 16553633 (-) True G85331
TU114924 lncRNA upstream 44635 16554036 ~ 16554811 (-) True G85332
TU114949 lncRNA upstream 117330 16626731 ~ 16626949 (-) True G85353
XR_005640080.1 lncRNA upstream 140440 16649841 ~ 16659310 (-) True LOC120564211
XM_039807471.1 mRNA downstream 1323 16452033 ~ 16461232 (-) True zgc:162879
XM_039807711.1 mRNA downstream 53112 16380943 ~ 16409443 (-) True LOC120563512
XM_039808991.1 mRNA downstream 208467 16213775 ~ 16254088 (-) True slco3a1
XM_039808675.1 mRNA downstream 253369 16193583 ~ 16209186 (-) True st8sia2
XM_039808674.1 mRNA downstream 287467 16155984 ~ 16175088 (-) False chd2
XM_039808187.1 mRNA upstream 20041 16529442 ~ 16532441 (-) True LOC120563779
XM_039807747.1 mRNA upstream 72107 16581508 ~ 16594186 (-) True idh2
XM_039807746.1 mRNA upstream 97961 16607362 ~ 16610903 (-) True ankrd34c
XM_039808320.1 mRNA upstream 187694 16697095 ~ 16763718 (-) False LOC120563869
XM_039808318.1 mRNA upstream 187694 16697095 ~ 16763717 (-) False LOC120563869
TU114908 other downstream 21590 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 918473 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 978629 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1389205 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1495108 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
unassigned_transcript_374 other upstream 255314 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 298655 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1417646 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1521607 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 1521607 18031008 ~ 18036276 (-) False G85813

Expression Profile