RNA id: XM_039807768.1



Basic Information


Item Value
RNA id XM_039807768.1
length 3214
RNA type mRNA
GC content 0.50
exon number 17
gene id fnbp4
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27034049 ~ 27043873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TAAGAGTGTATGTTAATAGAAACTGCAGTAACGTCTGAATGGTGTTGAAGCCTACGCATTGACGCATGCGCAGTATGACACGTGTATCGGATGCGATCTAGCAACCATTACCTaccaagcagcagcagagcagagcCGCAACAACGACGCCAGGGAAGGAAGGGAGCAGGCTACTAGACTGAGAGACAACGATGGATGAACAGGAGGGTGATGGACTCAGATTCGTGAGAGAGAGGCTCACAAACATGAAGACTCCCGCAGCAAAAGCAACCGAGGGTTTGTCCTTGCTTGGAGCCTATGATGATAGTGATGAAGAAGATGCTGGAGACTCTCAGCATACAACGACAAAGTCAGCTGACATTGACAGCACATTGGCCAATTTCATGGCTGAAATTGATGCAATCACCACTCAGCCAAGTTCAGAGGATGCAGCATCTCATCCTTCGGTCCCAACTAGCACCCCACCCAGACCTGAGGTTAATACTCAGCAGCCAGCCGCCAGTGAAGAACAGATCCAACAACACACATCGTTTGAGTACAATACAGAGTACTCGCTTGCTGGAGtgGGTGTAGAGATGGGAGACTGGCAGGAGGTGTGGGATGAGAACTCtggctgctactactactggaACACTGTAACCAACGAGGTGTCCTGGGAGCTGCCACATTATCTAGCTGATCAGGTGCAAAGTCTGGAGGAGAATGCCAAAAGcTCTAATGTCAACGGCACAGGGCATGCAGCTTATAACACCAAGGAAAATGCTGCATCTGTTGCAGCCCTACAGTCGGCTAAAGAGACCAAAGTAAAGGAGGTAATTGAGAGTGTTGTAGGCCTCACAAGTGAAGAGGAGGAGCGCTGTGGAGTGGCTGCATCTCTGCTTGGTCCTCTGATTCCTTCTGAAGtgaaagaagctgaagaaaaatggagaaaaagacTGCTTAAAGGCTTGGACGAGACTGAGAACAGTTTGGATTCTGATGGCGAAGGCGTTCGCCCTGCAGGATCCCCCTCTATTCCTCTGCCGGACCCTGACCCAGTCCCCACGGTCCAGAAAGATCTTGGCGCTAAGAAGCAGTCGGGAGACAACTCCGATGccgaggaggagacagaggaagacaCAATGGAGCTGGAACTGGCTCTGGAGAGGAAAAAGGCTGAGCTCCGGGCACTGGAGGAGGGTGACGTGAGCGTAGCGGGCTCCAGTCCTTGTTCTGAGACGAGCCAAGAAGCCTCTGGTTCTCATGGCCTTACACTAAAGAAAAGCCGGTGGAAGACtgccttcccctctgctcccaGCCCCGAATCGAATAGCAGAGGCTCAGACCTACAGGACAACACAGAGACGACACTTTCTAAAGTCCTAGAGAGTGTTGCGGAAGGAGAAGACAAGGAAACGGACAGTTCTGAGGAGAAAACAGTTACAAAACCTGCGGTAAAAGAAGAGGTGGAAACACCTGAGCTCAAAGTAGAAACACCTGAGCTCAAGtttcaGATCGGACAACTGGCTAACACCTTAACCAGCAAGATGGAGTTCTTGGGGATAAACAAAAAGGCGATCTCAAACTTCCAGTTTCTTCTGCTACAAACTGAGACTCGGATTGCTGACTGGAGGGAGGGCGCTCTGAATGGGGTCTATCTTCGCCGCAGGCTTCAGGAAGCTGCCGAACACATAAAATATTACGAACTTAACGCCACCCCTAAAGGCTGGTCCTGCCACTGGGACAGAGAGCACAGGCGGTATTTCTATGTGAACGACCGGACCAGTGCCTCCCAGTGGGATTTCCCAAAAgaggaggacaaggaggaggGCCTGAAAGGCAGCCACGGTGCCCAGACACAGATTTCCAGTCCAGGGGACGCCAAAACATCGTCTGCAACTGCTGGTGGGGTCACAGgatCGTCTACTTTTACCGTGGCTgccccaccaccacctccatCATCTCTCTGTTCCCCATCTCAACCTCCTCTTCCTGAAAGCCCACCTCCGCCTTCCAACAACCCCCCGCCTCCACCTCTGCCCCCAGGCTCACCACCTCCACCGCCTCCCCCTCCTGACAGCGATGAGGAGATcatggaggtggagatggagatggacgATGATAATGATGGGGAGCCTCCAGCCCCTGGAACGGAGGAAGATGGCAGTGGGAGGCCTCCTTTACCTCCAGGCACTGCTAGCATGAAGATCGTGGAGTCATCGGGCCCATTGGGGAAGGGTCAGAAACGTAAAGCCAGTCAGCTGAATAAAGCCATTACTATTGGCAGCAGTCCCATTATCTACACCCAGCCTGCTATCAGTGCAGCTCCTCTAATGTCAGCGACTGCCTACTGGGGCATGCCGGCTGTCCCTGCTCTTTTGGTCCCTTGTGAACCTCCTGCCCCCCCTATCCCGGCCCTACCTCCTCAACCACCACTGCCACCATCCCTGCCGCCCGTTGAACCTCCTGGAGCCAAAACTCTGCCCACAGACAAGACCAAGAAAGCCAAAAAGGATAAGTCCAAGAAGAGCAAGATCAAAATGCCTTCTCTGGTAATGAAGTGGCAGAGCATCCAGAAGGAGTTGGATGAAGAAGAGAAGAGCAGCTCCAGTGACGAGGACAGAGATCTGCTTAACAAAAAGTTTATCGAGGACTGGAAGCAACAGCAGCTCATGACAGGGAAAGCTTCAAAGAATGCCAACTTTGAGGCACTTCCTGATAACTGGCGGGAACGACTGAAGAAACGGAAGATGGCGAATAGCACGTAACATCAGTCACGTTAACTCAgtcaacatatttttttatttttttttaaatccactcCAACCTAACTATAAGGTCATCCTACCCCAGCTTAATTTCTGTTTAATGATCTATGGACTTCCTTTACCATTTTACTTGTTCACGATGGAGACAGTTAGAGGCCCCTACATGGCAGGCCATTCAGCACAGGGGTTTGATTGttctttttagtgtttttttttttttgccactatTGTAAATGTGCCAAAATTCTTGAGTTCATCAGAAATACTTcaccaccatttttttttttttatagacccCTGTAGATGACCACCACAGTTTGTTTGGAGGGATTGTCTATTTTATTCAGCATTTTTACAACTGTGTACATATAATGTCTAATGGGATGAGCCATGTTTTGGAAGGGGGAGGAATGTCACTGAActtgtacattttgtaaaaagttattaaactgtttttccaaatgcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118856 lncRNA downstream 29864 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA downstream 29864 27003584 ~ 27004185 (-) False G88245
TU118857 lncRNA downstream 30543 27002954 ~ 27003506 (-) False G88245
TU118855 lncRNA downstream 30543 27003091 ~ 27003506 (-) False G88245
XR_005639981.1 lncRNA downstream 32591 27000941 ~ 27001458 (-) True LOC120563588
TU118898 lncRNA upstream 11804 27055670 ~ 27056932 (-) True G88272
TU118902 lncRNA upstream 16686 27060552 ~ 27061136 (-) True G88274
TU118942 lncRNA upstream 126122 27169988 ~ 27170267 (-) True G88305
TU119051 lncRNA upstream 313213 27357079 ~ 27358179 (-) True G88380
TU119052 lncRNA upstream 315930 27359796 ~ 27362901 (-) True G88381
XM_039808585.1 mRNA downstream 450 27024719 ~ 27033599 (-) False agbl2
XM_039808582.1 mRNA downstream 483 27018697 ~ 27033566 (-) False agbl2
XM_039807775.1 mRNA upstream 5306 27049172 ~ 27050827 (-) True lrrc10
XM_039808766.1 mRNA upstream 17350 27061216 ~ 27077833 (-) True washc4
XM_039808765.1 mRNA upstream 17350 27061216 ~ 27077787 (-) False washc4
XM_039808767.1 mRNA upstream 17350 27061216 ~ 27077366 (-) False washc4
XM_039810046.1 mRNA upstream 91990 27135856 ~ 27143311 (-) True etfbkmt
TU118864 other downstream 19638 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 359166 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1437288 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1968561 25064752 ~ 25065488 (-) True G87803
unassigned_transcript_380 other downstream 3118143 23915834 ~ 23915906 (-) True trnar-acg_18
TU118971 other upstream 180186 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 311106 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3678242 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4199302 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 5062757 32106623 ~ 32108066 (-) True G89365

Expression Profile