RNA id: XM_039807831.1


Basic Information

Item Value
RNA id XM_039807831.1
length 1522
RNA type mRNA
GC content 0.44
exon number 7
gene id ccdc34
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26990622 ~ 26994899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGCGTGGTGTAtcatgggaaaaaaaagttgtttgcaAATCAGTTCCAGCGTTGGTAAAACAAGAACGAGCACAACAGCGAGACTTTTCTTCACATTTACGTACAAAGACATCCGCTAGCAATGTCTGGAGGAAGGATGCCCAACTGTCCTGCCTCTGCGTCCCAGGGCTTTAGCTCGACCCCTGTCAAAACAAGCCAGGGAAAGGACTTGCACACATCCAAGGGCTTGGACGACGGCATCTTATCCGACGACGAAGACACGTTTTCTCTGCTTTCTCCCATCTATCATGACAGTTTTGACAGCGATGAAGACCTGGAGCCCAGCCCAGCCCAGCAGACTTCACCCAGGCAGAGAGACAACTCCAGCCTCAGTGTTTCACCAGTCAGATGTGAGCTACCAAGAACACCGTCAGTGCAGATGTTGCATGCAGCTAGGGAGCCTGCAGGCTCACCTACTCTCAGTGCATGGGAAATGTGGCTGGTGAACAAAGCCAAGGAAGACCGTTTCAAATTGGAAAAACAAGCAGAGGAGGAGCGGTTacggaaggaaaaaaaagaacaacaagaaAGGGAGCGGGAACAGAAAAAGATTATCATGGAAGAAAAGATCCAAGAATGGCTcaggattaaaaaacaacagGAGAAGCACGAGCAACTTGTAAAACTGagcaaagaggaggaggagatacaGCGACAGCGGGAGAAACAGACCGAGATTGAACTGAAAGCTCAACAAAAGTATAAAGACTGGCTGCAAAAGAAGAATCAAGAAAAAATAGAAatggaaaagaaggaaaaggAGAAAGCTGTCCTGAAGGAGGAGCAGGAGAAAGAGCGCCACAAGAGGGCAGAGGAGAAGTTTAAAGAGTGGCTGGCAAAAGCCAATGAAAAAAGCAGAGCGAGTCCAAAATCACCTTGCTACCCAACAAgtCCCTATGACAAATCCTACCCATCACCCAGCTTCTGCAATCCAATCCCCTGGAAGCCTATTCATGTCCCTCCTCCAGAAACCTCACTGAATAAGACACCTGTCAAGAAAACAACGAACATTTCAACAAACCAACAACGGAAATGTCAACAAAGCCCCAGCACCGCTTTTAGACTGAGAAACTCTGCGAGGACAGCACAGTTGCTGCAGAAGAGATGACAAAGCAGGCCGACATCTATGACTGATATGGTAGCTTAGTTACGGCTCAAATATGATTTCATCACCGCTCATCCACTCCACCACAGCTCCTAAACTGACACTCTGCCAAACCACAGAATCATTTCTGTTCTAATTCTCTATCTACATTTTGGTTTGTTATATGTAGTACACTGGAGTGATTTAGTAATAATGCAGTAGCTCAAATTAGTTTGTACCTAAGGATGTCTGAATGTGTGGGATTTTTACATGATTTTACAAAGATGTTTATAATTTTTATAGACATTTAAGAGCCTTGCGTTTATTTCGTTTTATGAAAATCGTTTTATCCTGTAAATTTGCTTATTAGATAAAAGAGGCATCATCAAAGTTCTTT

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118804 lncRNA downstream 126818 26862778 ~ 26863804 (-) True G88209
TU118745 lncRNA downstream 196854 26793513 ~ 26793768 (-) True G88170
TU118738 lncRNA downstream 219230 26770410 ~ 26771392 (-) True G88163
TU118668 lncRNA downstream 440936 26547774 ~ 26549686 (-) True G88106
TU118660 lncRNA downstream 448610 26537908 ~ 26542012 (-) True G88101
XR_005639981.1 lncRNA upstream 6042 27000941 ~ 27001458 (-) True LOC120563588
TU118857 lncRNA upstream 8055 27002954 ~ 27003506 (-) False G88245
TU118855 lncRNA upstream 8192 27003091 ~ 27003506 (-) False G88245
TU118856 lncRNA upstream 8192 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA upstream 8685 27003584 ~ 27004185 (-) False G88245
XM_039807834.1 mRNA downstream 209 26986190 ~ 26990413 (-) False LOC120563586
XM_039807833.1 mRNA downstream 210 26986190 ~ 26990412 (-) True LOC120563586
XM_039807823.1 mRNA downstream 19756 26940304 ~ 26970866 (-) False ush1c
XM_039807824.1 mRNA downstream 19758 26940304 ~ 26970864 (-) True ush1c
XM_039808224.1 mRNA downstream 52249 26868886 ~ 26938373 (-) False abcc8
XM_039808576.1 mRNA upstream 9344 27004243 ~ 27008779 (-) True LOC120564006
XM_039808577.1 mRNA upstream 15074 27009973 ~ 27013068 (-) True LOC120564007
XM_039808579.1 mRNA upstream 23798 27018697 ~ 27033599 (-) False agbl2
XM_039808582.1 mRNA upstream 23798 27018697 ~ 27033566 (-) False agbl2
XM_039808580.1 mRNA upstream 23798 27018697 ~ 27033315 (-) False agbl2
TU118702 other downstream 315739 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1393861 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1925134 25064752 ~ 25065488 (-) True G87803
XR_005640031.1 other downstream 3074420 23909169 ~ 23916202 (-) False LOC120563922
TU118864 other upstream 18338 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 229153 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 360073 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3727209 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4248269 31243168 ~ 31250413 (-) True G89241

Expression Profile