RNA id: XM_039807846.1


Basic Information

Item Value
RNA id XM_039807846.1
length 1720
RNA type mRNA
GC content 0.55
exon number 5
gene id yars2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23150719 ~ 23156968 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGATTCTCAACTCCTCCTCGTTCGTGTTCTTGACACAGTCCAACATGGCTGCGTCCATGGCGAGGACCTGCCGTTATTTATCGCGGCATGGATCCTGTATTCTGCCTAGGCGAGCAAACGTGTGTTTCACACTCCGGTCTAAATTCCACTGTTCTGCACCTGCACATAACGGGCTTCTGTTTTCTCTAAATAAACGCGGTATTCTGAAGGACTCTTTCCCAGAAGACGCAGCGCAGGACCGGCTCCCTCGGTTGCTCAAGTCCGGCGCCCAGACTGTATACTGCGGCTTCGACCCTACGGCCGACAGCCTCCACGTGGGCAACTTGCTCGCTATCATCGGTCTGCTGCACTTCCGAAGCGCCGGGCACCATGTCCTCGCTGTGCTCGGAGGGGCCACGGCACAAATCGGAGACCCGAGCGGGAAAACGAGCGAGAGGGAGCGGTTGTCCGCGGACGCTGTCGAGGCGAACACACGCAGCATCCGGGAGAGCATTCACAGGATTTTCACCAACCACGAACTGCACTTTCAGGACGGTTCTAGGAAGATGGGCACCGTGACTGTACTGAACAACCTGAGCTGGTACAAGGACTGGGGCGTGGTGGGGTTTCTGTCGGAGGCGGGAAGGCACTTCAGGATGGGCACCATGCTCAGCCGCCACAGCGTGCAGTCCAGGCTGAAGGGCGCAGACGGAATGAGCCTGACAGAGTTCACCTACCAGGTGTTCCAAGCTTACGACTTCCACCACCTGAACCAAATATACGGCTGCAAGATTCAGCTCGGGGGCACCGACCAGCTGGGAAATGTGATGTCTGGCCATGAGTACATTCACAAAGTGAGCGGTGAGGAGGTGTACGGCCTCACCATCCCGTTGGTGACCAGCTCTGTGGGGGACAAGCTCGGGAAGACGGCCGGCAATGCGGTGTGGCTCAACAGAGACAAAACGTCTCCCTTTGAACTCTACCAGTTCTTTCTCAGGCAGCCTGACGCCAGCGTGGAAGGGCACCTGAAGCTGTTCACCTTCCTGCCTCTGGCGGAGGTGGAGAGGCTGATGGAGCAGCAGAGAGCGGATCCAGGGAAACGCCTCGCACATAAACGGCTGGCCGCAGAGGTGACAAAACTGGTGCATGGGAAGGAGGGCCTCGAGAGTGCTAAAAGATGTACCAACGCACTGTATCACAGCAGCGTGCAGGCCTTGGAGGAAATGAGTGACGAGGAGCTTCAGGAGCTCTTCAGGGAGGCTCCCTTCCATGAGCTGCTGTTGGAGCCGGGTACCACTGTGATAGACGCCTGTCGCCGGGTCAGCGCCATCCCCGAGGGACCCAGAGGGTATCAAATGGTTTTGGAGGGAGCCGTATGGATCAACCACAGGCGGACTGACAATCCAGAGCAGGTGCTGATCCCCAAACTCCATATCCTATCGAATGGACTTACCTTGTTCAGAGTGGGCAAAAGGAACTTTTACATCATCAAGTGGCTCAGTCTCTGAGGCTGTCTGCTCTCGCAAGGGACCAGTCTGACCAGTATGATGGACTGACTGGGATGGTAGGCAACTACACCTTTTGCAGGATCAGTGAGGAGATGTGGATGGACTGATACTTTGGAACGTACTGGGTTTTTGGCATAGCCTTAAGTCGCCTGTGGTTGTCctataaatatgtatatgtacagaTGTGAAGTTTATCTAAAGTTATGGTATTAAAAGGTCTTTGATATAAA

Function

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117838 lncRNA downstream 1375 23149119 ~ 23149344 (-) True G87464
TU117745 lncRNA downstream 312853 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA downstream 312884 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA downstream 312884 22834605 ~ 22837835 (-) True G87400
XR_005639987.1 lncRNA downstream 468443 22577017 ~ 22682276 (-) True LOC120563633
XR_005640017.1 lncRNA upstream 41604 23198572 ~ 23217138 (-) False LOC120563856
TU117844 lncRNA upstream 41620 23198588 ~ 23224641 (-) True LOC120563856
TU117845 lncRNA upstream 74270 23231238 ~ 23238532 (-) True G87469
TU117898 lncRNA upstream 258795 23415763 ~ 23417853 (-) False LOC120564579
TU118029 lncRNA upstream 472758 23629726 ~ 23630285 (-) True G87596
XM_039809715.1 mRNA downstream 2416 23144257 ~ 23148303 (-) True cdkn1bb
XM_039807735.1 mRNA downstream 207243 22934142 ~ 22943476 (-) True mrps35
XM_039808041.1 mRNA downstream 306956 22837978 ~ 22843763 (-) True adck2
XM_039809502.1 mRNA downstream 392729 22746489 ~ 22757990 (-) False pus7
XM_039807850.1 mRNA upstream 4182 23161150 ~ 23177303 (-) True pparab
XM_039807847.1 mRNA upstream 5809 23162777 ~ 23191431 (-) False pparab
XM_039807849.1 mRNA upstream 5809 23162777 ~ 23181566 (-) False pparab
XM_039808895.1 mRNA upstream 219613 23376581 ~ 23407669 (-) False fbln1
XM_039808896.1 mRNA upstream 234522 23391490 ~ 23407669 (-) True fbln1
XR_005639990.1 other downstream 444523 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 444523 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1411391 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 1411391 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 1437165 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 337362 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 582014 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 748134 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 752201 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 752201 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile