RNA id: XM_039807847.1


Basic Information

Item Value
RNA id XM_039807847.1
length 1702
RNA type mRNA
GC content 0.56
exon number 7
gene id pparab
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23161150 ~ 23191431 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTTCTTTCCTCCAGCTGTCAGTCATGAGGTCACTTCCTGCGGGTGTGAGCTCCACGGCTCTGCTCTGTATGGACATGGTGGGGGATTTTTGACAGCGGCAGCGCTGCTGGGAAACTAACAAGGACGTGGTTGGGGTCGGGGGACTATTTCTTCCCTCCTCGCTCTTCTCTCGATCCCACGCCGACCGCTTCTCAACCCAGCGAGATTTCCGAGGATATGGCGGCTTCGGATTGGGCTGTCTATTGTCAGTCTGATGAGTGAAAGTGCCGCCAACCCGTTCCTCCACCGTTATGGTCGACATGGAGAGCCATTACCATCCCCCTTCGCCCCTGGAGGACTCGGTGCTGGGCAGCCCCCTGTGCGCCGATCACAACTTCATAGGCGGCATGGAGGAGCTCCAGGACATCTCCCAGTCCATCGACAACGACGCCCTCAGCTCCTTTGATGTCCCCGAATACCAGTCCTCCAGCAATGGCTCTGAAGGTTCCACTGTTCTAGATGCCCTGACACCAGCATCCAGCCCGTCGTCGGTTGTTTACGGGATGGCAGCGGGCCAGGATGAGTTCTCATCTGCCTCCTCTTCGCTCAATCTAGAGTGTCGAGTTTGTGCTGACCGTGCCTCGGGCTATCACTATGGAGTCCACGCATGCGAGGGCTGCAAGGGTTTTTTTAGGCGGACCATCCGTCTGAAGCTGGAGTATGACAAGTGTGAGCGTCGCTGCAAGATCCAAAAAAAGAACCGCAACAAGTGCCAATACTGCCGCTTCCAGAAGTGCCTGTCGGTGGGCATGTCCCACAACGCCATCCGTTTTGGTCGGATGCCCCAGTCAGAGAAGCTAAAGCTGAAGGCGGAGATGGTAACGGGGGACAGGGAGGTGGAAGACCCCCAGGTAGCCGACCAGAAGACGCTGGCCCGGCAGATTTATGAGGCCTTCCTCAAGAACTTCAACATGAACAAGGCCAAGGCTCGAACCATTCTCACCGGCAAGACCAGCACCCCTCCTTTCGTCATCCATGACTTGGAGACCCTACAGCTGGCAGAGCAGACGCTTGTGGCAAAGATGGTGGGCTCAGCAGGAACGCTAAAGGACAGGGAGGTAGAAGTACGGATTTTCCACGTCTGCCAGTGCATGTCGGTGGAAACCGTCACCGAGCTCACAGAGTTTGCAAAGTCCGTCCCCGGGTTCTCGAGCCTGGACCTCAATGATCAGGTGACTCTTTTGAAATATGGCGTGTACGAGGCCCTCTTTGCCATGCTTGCCTCCAGTATGAACAAGGATGGGCTACTTGTAGCGTACGGCTCTGGCTTCATCACCCGGGAATTCCTCAAGAGCCTGCGGCGGCCGGTCAGTGATATGATGGAGCCAAAGTTCCAGTTTGCAATGAAGTTTAATGCGCTGGAGCTGGATGACAGTGACCTGGCACTGTTTGTTGCTGCTATCATCTGCTGTGGAGACCGCCCAGGCCTGGTGAATGTGGCGCACATTGAGCGAATGCAGGAGAGCATTGTGCAGGTGCTACAGCTCCATCTGCTGGCCAATCACCCCGACGACTCTTTCCTCTTCCCCAAGCTACTGCAGAAACTGGCTGACCTCCGGCAGCTAGTCACTGAGCATGCACAACTGGTGCAGGAGATCAAAAAGACAGAGGACACCTCACTGCACCCACTCCTGCAGGAGATCTACAGAGACATGTACTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117838 lncRNA downstream 13433 23149119 ~ 23149344 (-) True G87464
TU117745 lncRNA downstream 324911 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA downstream 324942 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA downstream 324942 22834605 ~ 22837835 (-) True G87400
XR_005639987.1 lncRNA downstream 480501 22577017 ~ 22682276 (-) True LOC120563633
XR_005640017.1 lncRNA upstream 7141 23198572 ~ 23217138 (-) False LOC120563856
TU117844 lncRNA upstream 7157 23198588 ~ 23224641 (-) True LOC120563856
TU117845 lncRNA upstream 39807 23231238 ~ 23238532 (-) True G87469
TU117898 lncRNA upstream 224332 23415763 ~ 23417853 (-) False LOC120564579
TU118029 lncRNA upstream 438295 23629726 ~ 23630285 (-) True G87596
XM_039807846.1 mRNA downstream 5809 23150719 ~ 23156968 (-) True yars2
XM_039809715.1 mRNA downstream 14474 23144257 ~ 23148303 (-) True cdkn1bb
XM_039807735.1 mRNA downstream 219301 22934142 ~ 22943476 (-) True mrps35
XM_039808041.1 mRNA downstream 319014 22837978 ~ 22843763 (-) True adck2
XM_039809501.1 mRNA downstream 404817 22746489 ~ 22757960 (-) False pus7
XM_039808895.1 mRNA upstream 185150 23376581 ~ 23407669 (-) False fbln1
XM_039808896.1 mRNA upstream 200059 23391490 ~ 23407669 (-) True fbln1
XM_039809707.1 mRNA upstream 220079 23411510 ~ 23422457 (-) True LOC120564579
XM_039808562.1 mRNA upstream 312366 23503797 ~ 23537525 (-) True ppm1h
XM_039808563.1 mRNA upstream 312366 23503797 ~ 23537524 (-) False ppm1h
XR_005639990.1 other downstream 456581 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 456581 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1423449 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 1423449 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 1449223 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 302899 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 547551 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 713671 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 717738 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 717738 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile