RNA id: XM_039807855.1


Basic Information

Item Value
RNA id XM_039807855.1
length 2235
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120563596
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13517683 ~ 13520737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccagtgtggccctttgtgaaaatgagtttgacaccccgggcttagatcattaaaatagggcccttaatgttAATAGCCTGAAATTCATATTTGTAGAAGAGGCAAGAATGCTATTACATTCAAAACCTTTGCTTTTGCAGGAGAGCTGTAAGTAAAGCAACGAAGGAGTTTCATGCCTTTGGGATTGTGTCGCTCTTCCCATTTTTGAAAGACCCATACTCAAAAAAGGGATATGAACATTTCTATGACATGCAGAGCAACAAAGGCTTTCTTGAGTGGCGTATAAAAACTGTGCAGCGTCAATCCAAAACCTCATCTGCATCCCGTAACAGAGTGGAGCTGAAAGGAGGTCCCACATCGTCAAGAACATCTGGATCCATAGATGACCAGCAAACAGGAGATGAATGTATGGAGGCCATGTCTCTTCTTCACCACATTACTGACCGTGACTTTGTCTTCCAGAAGATGAAAGAAACATTCCATTATCGGCAAAAGGTGCTCCATGACCCACAGCAATCGGCAGACATACTTCAAATGTTTCCTCGTTTCTTGGACACTAAGGGACTGATTTTGCAAGACTTCTTGATGATGTTTGGAGCAGAGACTGCATCCAGGTTCCTGGAAAAATGGAACACCAGTTTTAAAGACAAAGTAATTCAAGAGGCCAGGACCCTCAGAGAGACGTCTCTCCTGaaaaaacagctgaaatctGCCCTGAATGAAGAATCTGACACTGCTGATGAGCCAGAGTGGGACAGCGACATGGCATCTCTTCTTGTATTGCTCCATCTGCTAACTCCTCAACCAGCTGGAAGGAAGCGGCCCAAAAAGATCAGTGTTGGAGAGGCAACTGATCATTTGGTTAAATTTCACAAGTCTTGCCACAGCCTTGAAGAACATCTCATGACGATCGAAGGAAACCCCCAGCCGTATCTGCTGGCCACGGGGACTTCAAAAGCACAGGTTTTCACCTTCTACATAGTCTTGGATAGAAAGCTTCTTCCATGTCAGTCTTCTACATCTCTGGGTGCATTTGATGAGCTGTTCAAGTCCCATTTTGTTTTCAGTGTGCAATATGATGATGCTCTGTCGAGCTTGTACAGATTCCTGCAGACTACTCTGTACAATATCGATATAGGGACAACAGAAGAAACTCCAAGAGTCAAAGAGTTAAGAGCAAAGCTGTTAAACAAGCACTAATTTGCTAAAGCAGCAAACATGTTCAGATGTATCCTTTGTGCGTCATCCTTTGATACAGTTTTACTTCTGTTCAGGCACCTCAAATTAATTCATGCAATGTATTCTGGGAAAAATTTGAGACTAAAATGTGGTCAAATAGGATGTTGCTTGCAATTTTCAAGTTATTCTGGATTTAGAAGACATCTAATTAAGATACATGATCCTACTGACAACACATGTGTACCTCATGAAACCCCTTCCAACTATGACACTCAACTGCACAATCATTCTGAGTGCTTAAATGATGAAACACCCTCTACTTCATCACAATGCCAAAATGTTGAAGCAGGCCCTTCACTGTCAACTCACAGCAAAGATATGTGTGCCTCCATCATAGCCAAACTTTTGGGAAGCGGTGTACCAAATACTGTAGTTCTTTCTACAATTGAAAATTTACAGGAATTTGTGGAAGATTTGCAGTCTAATATTCAGGACCAAGTATTGAACTTACTTCCAGCTGACAATCCCTCTAGATCAGCCGTAGAAGAGCTTTTTAAAAGTATGGACAACCCTTTTAGCCAGTTGAATACGGATAGCAAATGGAAGAAGTATTTCAGGGAAAAATGGGATATTGTACAGCCAGTTGAACAGCGCCTAGGAGTAAGGTATGATACCAGACGAAATAGCAAAACTGGAACCTATGAGCAAGTTCCAATCAATGACAAGTTCATATATATTCCCATACTGAAAACACTCCAGTTCATTTTCAAGAATGAAAGTATTTGTGAGATGATGCAAACATGTACTCAGTGTGATAAATATGAGGACTTCTGTGATGGAAGCTACTTCAAAAGTCATCCTTTGTTTTCGAGTAGTAATTTTGCCCTTCAAATCCAACTGTACTATGACGACTTTGAGTGTGCAAATCCACTAGGTTCAAAAAAAGGTATACATAAAGTTGGCTGCTTTTACTTTATCCTTAGAAATCTTCCCCCCAGGGTGAATTCTGCCTTAATGAACATTCATCTTGTGTCATTGTTTCATGCACAAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113907 lncRNA downstream 73071 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 132478 13325986 ~ 13385205 (-) False LOC120564547
TU113825 lncRNA downstream 192425 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA downstream 193510 13322182 ~ 13324173 (-) False G84536
TU113809 lncRNA downstream 245154 13271252 ~ 13272529 (-) True G84528
TU113916 lncRNA upstream 123680 13644417 ~ 13644848 (-) True G84592
TU113923 lncRNA upstream 163087 13683824 ~ 13685469 (-) True G84597
TU114089 lncRNA upstream 551896 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 702460 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 702513 14223250 ~ 14236952 (-) True LOC120564470
XM_039808132.1 mRNA downstream 91022 13409573 ~ 13426661 (-) False nfat5a
XM_039808131.1 mRNA downstream 91022 13409573 ~ 13426661 (-) False nfat5a
XM_039808133.1 mRNA downstream 98402 13409573 ~ 13419281 (-) False nfat5a
XM_039808134.1 mRNA downstream 98402 13409573 ~ 13419281 (-) True nfat5a
XM_039808969.1 mRNA downstream 129697 13386741 ~ 13387986 (-) True LOC120564184
XM_039807854.1 mRNA upstream 54365 13575102 ~ 13618786 (-) False mafb
XM_039809916.1 mRNA upstream 151219 13671956 ~ 13682237 (-) True si:dkey-234i14.6
XM_039809652.1 mRNA upstream 165461 13686198 ~ 13693332 (-) False prpf18
XM_039809651.1 mRNA upstream 165461 13686198 ~ 13693332 (-) True prpf18
XM_039807977.1 mRNA upstream 189249 13709986 ~ 13722388 (-) True cpt1b
TU113814 other downstream 286588 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1373137 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1629285 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2855005 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 3085539 10427562 ~ 10432144 (-) True G83826
TU113910 other upstream 53094 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 510367 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 702513 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 981223 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1445718 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile