RNA id: XM_039807873.1


Basic Information

Item Value
RNA id XM_039807873.1
length 2768
RNA type mRNA
GC content 0.45
exon number 11
gene id hbp1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20675436 ~ 20686687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTACGCAGTTATGAATGAATGAGCTCTGGTACGCATGCGCCAGATCCTTTTTTAAGTTTATAAACAAGGCCTCCACGCAGCGGGTCACATGACTAGTCACAGAGGTATACTGTCCCGATTCAGAACAAAGGATTCCCTAAAAGCTTCATACCTTTTCATTGATGCATGCAATGCATGACATGTCTTGCTATGATAACATACTGCCTGgggtatatttttattttccgCGGCCTTTTACGGATTATGTGTAATGTTTTTTACTCTATGGATCCGTTCGTTATGTCAATGAATACAACAAAAATCCGCTGAACACCATTCAGACTTATCATAAAATCAGCTAATGTGGCAGAATATGATGATGGAAGCTGAGTAAACTGACCTGCAGCCTGTTAAAAGAAATAGAGGAACAACAGAACATTGTGAGAATGGACGAGTCTTTCGATCCACTCAAGTGCAACGAGGAACTGCCTTCCTCACCTGGGTGCCACATGGATTATGATGACATGCCAGAGTTGCAGGAGGTAGAGGACCAGAGGTCTCCAGGGTTATTTCAGGTTGGAGCAGGGGTGTCTCACCAGGAACTCAGCTGCTCCCCCAACACCAACTGGCTCACTGAGCTCGCCAACATTGCCACCAGTCCTCAGAGCCCCCTGTTGAAGAGCGTCCCACATAAGAGATCATCTCCAGTCCACATCTTTGGCAACAGTAATAGTTTACATTCCTACGCCCGTCCCCCATTAGCCAGTAGTGCACCCAACCCGTCCAGAGGCCACCTCAGGGAGCGCAGGCGTGTCAGGGCTAGCAGTGAATCGGAGTCTGGAGTTTTCTCAATGTCCTCATCTTTTTCTGATGATGAAGACATGGCCTGGTCTCACAACTGGCCCTCCACAGCCTGGCATTGCTTCCTTAAAGGAACTCGCCTGCGCTTCCATCGAGGTCCTAATGTGGAGTGGCAGGAAGCTGATGAACTCAGGGATTCTGATGATGACTCAGATGATGAAACCATGATGCCATCGTCCTCCTCTTTTAAGAGATATGGTTTAGAGGGTCTGAAGTTGGTGAGCCACGAAGAGACAGTATCTTTTGGCCAGGCAGttcttaaactgacctttgaccctggtTCACCCGATGATGGCCTTTTAACAGCTGAATGCCGATTGGATCACCCATtttttgtcaaaaataaagggTGGTCTTCCTTTTATCCGAGCCTTACTGTGGTGCACCATGGGATCCCTTGCTATGAGATGCAGTTGGGCAATGTGTGCCTGCCACCAAACCACCCAGAAGCCATTAACTGTGATGACTCTGTTGTCTTTGACACTTTCAGAAGTTATGACTTCACCCCACTAGACTCCTCAGCAGTGTATGTTCTAAGCAGCATGGCTCGTCAGCGCAGGACCTCCCTGTCTAGTGGGGGTGCTGTCAGTCCAGACTGTGATAAACTTGAGCGCTCCAGCTCTCCACAATCCTCGACTGGCAAATCAAACAGGAGCAACACCTCAGGGACAGCCAGTGGTGCCACGCCTACAAAATGCAAGCGGCCAATGAATGCCTTCATGCTCTTCGCCAAGAAGTACAGAGTGGAGTACACACAGATGTATCCTGGGAAAGACAACAGAGCCATTAGTGTCATCTTGGGTGACAAgtggaagaagatgaagaatgAGGAGAGGAGGATGTACACCATGGAGGCCAAGGCTCTAGCTGAGGAGCAGAAAAGACTCAATCCAGACTGCTGGAAACGGTTCCCAGCAGACCTAGATAATCCCCCAGAAACCCCAGCTGCTGGCGTTTTGACAAGGAGAGGTGCTGGACAGAGTTTGATGGAGTGCTTGATGCCTCTTTGCTCTCCTGTATTCTTGAGACTCAACTGTGATGCTGAATTCACTTGCTTTTTGTAACCTTAAACCATTAGAGACAAACCAGAATTATGAACTAtaaacaaaacatgtaatcTAGTCACTAACAGTGCATATATTTTCTAATATCTTTAATTTCAAAGATGTCTTAATCCCCTTATATAAGAATGAACCTCCTCATTTATTCCAGGTTATTTCATATTCAGTTGGAGTTGGAGTTGGAAAATGAAAGCCTGTGGTGCTATGCTTCAGTGTAGAAGGGGCAGTAAACAACAAGTGTCTATTTATAATTGTAAAAGGGGAAATTTTAGCTAACTTTTTCACAACTGTTCAAATGGATTATATTTGTaagattcaatatattgcacaGATTGGTAACCCTTTCATACATTTtgtaatacagtatatattctgCAGCTCGACTATTGCCAACCGTTTGTGATGCTGCCCTGCCACGTTTTTTGATTTTTGCCCAACCACCCAGCCATATGATGAGAGGGCTTTCAGCATGTGGTGGTGGGTTCAGTCACAAAGCACTTCAGACCTTCGCTGGAAGTCTTTGTATCTTCTGCactttatataaatatgtaatCTAAACCTTTACAGCCATTGTATACTGGTGCAAACCATTTGTATAATACAGCTAGTATCTTGACAGTTAGCCGTTTGACACATTCATGGCCCACTAGCTGTGTTCTGCTTTCAGGTTGCTCTCGAATTTTAAGTGCTTTGTTCATAATGTACAGGTTTCACAGCCCCAACAACCTCTTGCACAAAATACCCTTGTATCATATtataaatacttttttaaacttgCATCTTATCCAAGTGTTTCGTTATTTTTTATAAACTGTAATCAACCTGTCGGGATGCTTGGCTTTGTGAATACATGTTTTTGCCCGTC

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116815 lncRNA downstream 213613 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 411230 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 422910 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 433586 20241433 ~ 20241850 (-) True G86652
TU116708 lncRNA downstream 659624 20014338 ~ 20015812 (-) True G86605
TU116909 lncRNA upstream 13079 20698815 ~ 20699637 (-) True G86761
TU117040 lncRNA upstream 222653 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 416894 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 454771 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 559274 21245010 ~ 21251759 (-) True G87030
XM_039809647.1 mRNA downstream 65368 20604024 ~ 20610068 (-) True LOC120564551
XM_039809648.1 mRNA downstream 79332 20590302 ~ 20596104 (-) False LOC120564552
XM_039809649.1 mRNA downstream 81732 20590302 ~ 20593704 (-) True LOC120564552
XM_039809650.1 mRNA downstream 81937 20590302 ~ 20593499 (-) False LOC120564552
XM_039807721.1 mRNA downstream 382854 20275877 ~ 20292582 (-) True LOC120563518
XM_039807870.1 mRNA upstream 1329 20687065 ~ 20708195 (-) True hsp90b1
XM_039807869.1 mRNA upstream 14023 20699759 ~ 20708089 (-) False hsp90b1
XM_039808569.1 mRNA upstream 41405 20727141 ~ 20762189 (-) True kcnd2
XM_039808568.1 mRNA upstream 41405 20727141 ~ 20762188 (-) False kcnd2
XM_039808570.1 mRNA upstream 41405 20727141 ~ 20762187 (-) False kcnd2
TU116763 other downstream 416177 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 992519 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1103514 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1286861 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 1358026 19315435 ~ 19317410 (-) False arpp19b
XR_005640056.1 other upstream 121146 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 191975 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1027306 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1049270 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 1049270 21735006 ~ 21739328 (-) False LOC120564778

Expression Profile