RNA id: XM_039807889.1


Basic Information

Item Value
RNA id XM_039807889.1
length 5406
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC120563607
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21026854 ~ 21059534 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GcgggagacagagaaagggagagaaatacatagaggaaagagggaaagagaagaaAGTGTCCATTACACCGGGTGGATTTTTCCAGAGCACCGATGTTGGAACACTCTTCTGAGCTGGCCCTGGTGCAGAGTTTGTATGCCAACAGCATGCGCTGTCCCCCCTCTGCGGCCGGGATCTCTGTCAGGAATGAGGACCTGCCTATGAGCAACGGCAACGGCAACGGCAGCAAGATGAACGGGTCACTTGAGCAATTGGACCAGCCGGACCTAGACTCCATCAAGATGTTTGTGGGACAGATCCCGCGATCCTGGTCAGAAACGGAACTTAAAGAGCTTTTTGAGCCCTTCGGACCTGTGCACCAGATCAACATCCTACGTGATCGCACCCAGAATCCCCCTCAGAGCAAAGgatGCTGTTTTGTAACTTTTTATACAAGAAAAGCTGCACTGGAGGCCCAGAATGCACTGCACAACATAAAGACTTTAAGTGGGatgCATCATCCTATTCAGATGAAACCCGCAGACAGTGAGAAAACAAGTGCGGTAGAAGACCGAAAACTCTTCATCGGAATGGTTTCAAAGAAATACGGCGAGAACGAGATCAGAATGATGTTCGCATCTTTCGGACAGATGGAAGAGTGCCGAATTCTCCGGGGACCAGATGGTCAGAGCAGAGGCTGTGCGTTTGTCACATTTGCTACCAGGGCAATGGCACAGAATGCAATCAAAACCATGCATCACTCTCAGACTATGGAGGGCTGTTCCTCACCTTTGGTGGTGAAGTTTGccgacacacagagagataagGAGCAGCGgcgcctgcagcagcagctagtgcAGCAGATTCAGCAGCTCAACAGCGCCTCCACCTGGGGAAACCTGGCCGGCCTGGGGACCCTCACACCGCAGTACCTGGCATTGCTCCAACAGGCCACATCTACCAGTAACCAAGGCAGTTTCAATAATATGCAGAGGCTAGGAGTCGGTTCAACAGCAGCGTCCAGCGCGGGTGCTGCCATGAACACCTTGGCATCTCTGGGCACACTGCAGGGTCTCACTGGCACCTCTATGGGCCTCAACCTCAACGCTCTTACCAACAGCATCAGTGGTATGGGGGCCATGAACGGAGGCCTGGGAGCCTCCATGGCCAACGGGTCAGCAGCCAGCTCCATGGACGCTCTGACCCAGGCCTACTCAGGGATGCAGCAGTACACCGCCTCCGCCCTGCCCTCCCTCTATGGCCAGTCTCTCCTGCAGCAGAGCATTGCTGGCGGCCAGAAGGAAGTAGGGCCAGAGGGCGCCAACCTTTTCATCTACCACCTGCCCCAGGAGTTTGGGGACCAGGATCTTCTGCAGATGTTTATGCCTTTTGGAAATGTGGTTTCTGCCAAAGTCTTCATTGACAAGCAGACCAATCTGAGCAAGTGCTTTGGGTTTGTCAGCTATGACAATCCTGTGTCTGCGCAAGCTGCCATCCAGGCCATGAATGGTTTCCAGATCGGAATGAAGAGGCTGAAGGTTCAGCTGAAGCGCTCCAAGAACGACAGCAAACCCTACTGATCCTAGCCCTGGggccttcccccccccctccccagctCTAATGCTAGCACTGCTAGGaACAAATCTCCATGCCTGTTTGCTCATCATTAGCCTAGCATGTCTTCATGATGTTGAAAGCCAAGCCAAACTCCTGGCCTCATCATCCCACCATTGTCTGTGATGTCTCTCTAAGCTCGCCTGACCAATACCTGGCCACCCACTGACCCTTGACCTTAGCTCAACCTGATTTTTCTGCATGtgtattcattttgttttggttttttttctgtatagAAATGTGACAAGTGGGAGAGAGGTCAAGCAAATCAATGTGAAAAATTGCCTGCGTGCATTCATTTAAGAGAACTTTTTTcgaatgtttttccttttttttgcgACTGTTTTAAAAACCAACCTGTGGGATTTCGTATTTTTAAtttagctttgtttttttgtgtttatttttaccTCTCTCAGTAAAATTCACTTGAAAGTTGAATACAGGGATTGGCACACAGCTGTGCTATTTGGTGCCATTAGCAATACGTTGgcttcttttaaaaaagaaaaaagaaaatgctacAGGCCACTTTTCAACACTTTTGAAAGTCTGACCAGTAAAACCCCTCTCAGTGCTCTGTAATGATCTCTACATTTTGCGGGCAGTGTGAAGATTTACACCAAggctatttaaaaatatattttcttttcatttacaaaaatccagtgtatttacctttttttgaaCTATTGATGGCACAATAAAAGGTACATTTGCTCTGCTTAGAGAAATGACTACCTACATGAGTCAACTTTTTTAGAACTGATTCACAAATAGACAATCTGTGGTTTAAATGCACACTTAGATTACCTATATTTTATACCATTGAATCTATAGAAGTTTAACTAACAGAACCCAGGCAAAACTTTGGGTTTTTTGTAGATTATGTTGTAatgtcatctgtgtgtgtgtgggggggggggcgggtcTTCagtgtattacatttttaaagagGACTAAAATCAGTTTGATCGGGCGTGAACGTTTGAGGATCATTTATAGTAAATTAAAAACACTTTAAGTCAAAAAATTCCTCTGCATTAATTGTTATTTCAACATCTgggaaaaggtaaaaaaaaaaaaaattccacaaGGGTCACAGTATGTAGACTTAATTTTCTTTTCAGCGTTTATGAAAAATTTAGTGTTCAACTTCCACGGTACGTCTTGTTGACTTTCTGTGAGTTTGtcattaataatttaattaattgatgTTTCACCTTGGTTTAGTTTGGATGCCTCATGTTGAAAGATGATTAATGTCTGTTTATCATACAGATGCCAgacaatgtatttttgttttaatttgatgttaaagtgcccatgtgtcaaactcagtgTTTTTGAATTCACACGTTTGTTCCTGTAATATTACCTAGttttctttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgaccacaCCGTGACACGCATAACACTTTCTGTGGTTGCAAATGTGGGAGCCCCTGAAGAAGAGATCACTTGGACACAACACACGACCTGTGGGTCTCTGCACATTTTATAGACACACactcttgcttttttttttattttagttttttgctGATTGTTCTTTTAAGTGACTTCCAGTATCATGTTTCAGTCGTACACAATGCACAGCACATTAATGCTACTTACTAAGTCCACCACAAATAGTGTTGGTTTACAAATACATtccatttttttcaacacaaaGTTTACATTTAGTTTTTGCCGGGGTGGTATTTTGTCTGTTGTACTACACGTTGCGACAACCCTGGTAAAATAACAACCACTTCACTCCCAAAGAAGGGTTCCCTAAAACTGCGTACCTGGTGGCGCTAAAAAGTTGTCAACTCAGgggctttttttgtgtgtgaaactAGACACTCACACAGGATTACGACACAAAAATGCACACTTATTCACCATTTGACCTTTTCGgttttggatttattttttattttttctcgaaatacataaatattccaaaaaatatataatataaagagGTACCAAATTTGAAACTGAAAGTGCTTGAGGAAAGTGTTGTGGTTTTGTAAGGAAACATTAAGCACAATTGTGGGAGCTAATCACTTTTGcagaatgttgtgtgtgtgtgtgtgtgtgtgtgtgattataatCCCCAAAATTTCAAGGTACCACCGATTTCACTTTTTAATATGGGCATGtgctttttacagtgtgttttttCTATCCAAATGCAATACAATATTCAAAGTGCCATATATACGTCTAGAAACTGCCTACACATCCTTATCAGGCCTTGGTTTAGAGATTGCTGCAGTTCGCCTTTTTTGTCTATTTATGCCAGTGTAATCGAAAGCTCTTGTCACCTGCTCATGTCCcccccttctcttcctcccccccaccttgtgtgttgagttattggTAAAATGTGTGTTGTGATGTACTCAATTTGAAcagttggtttaaaaaaaaaattgtagatAAACAATAAACTTCCCTATACATTTGAAGTTTAAACCTCTTTCTTAGTGAGTGTGAACACGTGTACTGTAACACTTTGCGATACAAACGATGGGTGACCAGAAGGGGAATTTGTTTCAAAATCAAAGTGAACAAGATAAATCtcaagttaataaaaaaaaaaaaaaaacttgagtgcCATGTTAAGATcttgaaatgataaaaatgTGTCCAACACTGAAATGATTGCAGATCGGTGGTTGGTATGCAGTGTATGGTAAAGTGTTACtgtgaatgaataaaaaaagcacAATGTACGGTCCACAGCGGTCCTAACAGGAACTTGACTCACTTCAGGGGCTTCCATCACAAATCCCGTTCAAGCTCTAacaatcactttttttgttctgttttcatATTCTGAAgtgctattttattttatttttttgacaagtGTGGTCGCTTTGCATCTCTATAGATATTGTCTTgatctaaaagaaaaaaaaaaaaatcttttcctGTTATTTTCTTGTCTGATAATCGGTAGGACTTTGTTCATGTTCCACCAATAATTTAATAGATGTTTTATCTTGTCTTGATGAAAGCCAAAGTGGGTGCATCTTGATGTGATCTGTAATATGCAtacagtagtttttttttttttttctgttcagtCAATATAAATTTTTTGAAACTGggtgggatttaaaaaaaaaaaagacatgcacAGGCTTTCCAATTTCTACAACTGGTTGTTCATATGTATTTTGTACCAGTGAAGCTTTTTATATtggaaattaaagaaaaaaaattatattggaAAAAAATTGTCTGGCCTCTCAATGTGGCCTCGCCTTGACCAGGTCTCGAGTTTGGCCTCTTGGTGGTGTCAAgcaatttttgtttgtttttttgtctctaaaAGATGCCTGATTTTGATTTTACTCAAATCTCTTTGGGTTTCTCTATTCGTTAATCAGTttccttttttgggggggggggatcctcTAAATCGTGGTAAGTTTCATGTTAGTATTTGTGCTGTCCACATAGTTTAATGGTCATCAGGATTTCAACAACTTTTGTGGATAATTGTCTTAGTTGAAGAGTTAACGGTTTAGTTTGAGCCTTGCTTTTTACCTGTGTAGAGTtttctgattttgttttttcccaTAGCGGGGTGTGTAGCCGAAAGACTGTGTTCTTTTTTGGTCAATGTTTGTTCATGTGTGGTGTGTTTCTTTGCCTCTGTCTCCAAATTAAACCATTTCCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117040 lncRNA downstream 118264 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 327217 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 565031 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 762648 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 774328 20250890 ~ 20252526 (-) True G86660
TU117182 lncRNA upstream 43098 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 80975 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 185478 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 310031 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 403173 21462705 ~ 21466246 (-) True G87107
XM_039809230.1 mRNA downstream 2308 21004383 ~ 21024546 (-) True dhtkd1
XM_039809237.1 mRNA downstream 24460 20982554 ~ 21002394 (-) True camk1db
XM_039809231.1 mRNA downstream 53688 20940954 ~ 20973166 (-) True LOC120564353
XM_039809222.1 mRNA upstream 2986 21062518 ~ 21071325 (-) True taf3
XM_039807857.1 mRNA upstream 13534 21073066 ~ 21098375 (-) False tasor2
XM_039807858.1 mRNA upstream 13534 21073066 ~ 21098375 (-) False tasor2
XM_039807856.1 mRNA upstream 13534 21073066 ~ 21098375 (-) True tasor2
XM_039807859.1 mRNA upstream 27880 21087412 ~ 21098386 (-) False tasor2
TU117029 other downstream 147216 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 198251 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 767595 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1343937 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1454932 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 653510 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 675474 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 675474 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1629629 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1631516 22691048 ~ 22706196 (-) False parvg

Expression Profile