RNA id: XM_039807904.1


Basic Information

Item Value
RNA id XM_039807904.1
length 5778
RNA type mRNA
GC content 0.51
exon number 21
gene id sin3aa
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 11146670 ~ 11169923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATATCTGAAACCCCGCCTCCCCCCCGAGCTAACCGAACGGAGATTGTTTTCCTCTCTCGGGGAGATTTTCACTTTGCAGCCCACAGCTTgaattgtttattttaaaatcacaaGCAACTGATAAGTTGCTTTCAGCACATACGTCACTTTGCTATCTTCCCTGGCCAAAGGTGTAGCGGTTAACTCACAAATAACGGATTATCAAAGCATCATTTGCGATCTTCAGCTTGCTATTTGGGAGAGGGGCCTCTCAGCTTTTACAAGTATGAGTTCATAATGAAGCGGCGACTGGAGGATCAGGAAACGGTTTTTGCGTCCCAGCAGCGGCGCCTCGCTGGCAACGCGGAGGCTTTCCAGCATCGTGTCCTGGCCCCTGCCCCTGCCCCAGCTGTGTATGAGGCCGTGTCTGACAAcatgcagcccacagcaggcgTCCAGTACTCCGTCCCCCAGGGATACCAGGTGTCTCTACTTTCCCAGGTTCCCACCGTGGCCCAGAACAGTGGCGGGCATGGGCACACTCCAAGCCCACCCGTCCATGGTGGGTCCCACCACCACAGCCCAGCAGTCCAGTCCCACGGGCCCTCAGTGATGTCAGGGCACAGCCATACAGCGCCTCCTCAAGCCTCTGCACAGGGCCAGCAGTTCCAGAGGCTCAAGGTGGAAGATGCTCTGTCCTACTTGGATCAAGTGAAACTGCAGTTTGGCAACCAGCCTCAGGTCTACAATGACTTTCTGGACATAATGAAAGAGTTCAAGTCTCAAAGtATTGACACCCCTGGAGTCATCAGCAGAGTGTCACAGCTTTTCAAAGGCCACCCCGACCTCATCATGGGCTTCAACACCTTCCTGCCACCTGGCTACAAGATCGAGGTCCAGACCAACGACCTAGTCAACGTGACCACGCCTGGTCAGATCCACCACATCACCCCGCATGGCATCTCGGTCCAGAACCTCCCCATAACAGTTGCAGCTACCCAACATCCGCCCCAGCTCCCGTCTGCTGCAACCACCACCGCTCCGCCCCTTCTGACGCAGCCCACCCCCGCCAAGACGAGCAAGCCTCTTCAGCCCCAGGCGTTGACACCGAGCAGTCAGAGCAATCCGTCCATCCCTGCGTACACCTCTCCTCGCTCCCCGCCCATGCAGCTCCACCCGCCACTCAGCGGGACCCCCACTGGGCCACCCATGCAGAACAACCAGCCTGTGGAGTTCAACCACGCCATCAACTACGTCAACAAGATCAAGAACCGCTTCCAGGGCCAGCCCGACATCTACAAAGCCTTCCTGGAGATCCTCCACACGTACCAGAAGGAGCAGCGTAACGCTAAGGAGGCTGGTGGGAACTACACACCAGCTCTGACGGAGCAGGAGGTGTACGCTCAGGTGGCCAGACTCTTCAAGAACCAAGAAGACCTGCTCTCAGAATTTGGGCAATTTCTCCCTGATGCCAACAGTTCAGTGCTGTTAAGTAAGACCACAGCCGAGAAGGCAGAGTCTGTACGGAACGACCATGGTGGAACTGCCAAAAAGCTGCAGCTCAACAACAAACAGAGGCCCAATCAGAACGGCTGCCAGATCCGTCGTCATCCAACTCCAGGGACCACACCCCCTGTCAAGAAGAAGCCCAAGTTACTGAATTTGAAAGATCCCTCGGTGGCAGAGGCCAGCAAGCATGGAGTCGGAACAGAATCTCTGTTCTTTGAGAAGGTGCGCAAAGCCTTGCGAAGTGCAGAGGCCTACGACAACTTCTTGCGGTGTCTGGTCATCTTTAATCAGGAGGTGATCTCCAGGGCTGAACTAGTGCAGCTGGTGTTGCCCTTTTTAGGAAAATTCCCCGAACTCTTCAACTGGTTCAAGAACTTCCTGGGATATCGGGAAATGTCCCACATCGAAACATACCCCAAGGAACGGGCCACCGAGGGCATCGCCATGGAGATTGATTATGCTTCCTGTAAGAGACTCGGCTCCAGTTACAGAGCTCTGCCCAAAAGCTACCAACAGCCCAAGTGCACCGGCAGAACTCCACTTTGtaaagagGTCTTAAATGACACCTGGGTCTCCTTCCCCTCCTGGTCTGAGGACTCCACGTTTGTCAGCTCCAAGAAGACTCAGTACGAGGAGCACATCTACAGGTGTGAGGACGAACGCTTTGAGTTGGATGTAGTACTGGAGACCAACCTGGCTACCATCAGAGTCCTGGAGACGGTACAGCGGAAGTTGTCCCGCATGTCTGCGGAGGAGCAGGCCAAGTTCCGCTTGGACAGCACACTGGGCGGCTCTTCGGAGGTCGTACACCGTAAGGCCATCCAGAGGATATACGGAGACAAGGCGCCCGATATCATCGATGGCCTGAAGAAAAACCCTGCTGTTTCTGTCCCCATCGTGTTAAAAAGATTAAAGACCAAGGAGGAAGAGTGGCGGGAAGCCCAACGCGGCTTCAACAAGATCTGGAGGGAGCAGAACGAGAAGTATTACCTCAAGTCTCTGGACCATCAAGGCATCAACTTCAAACAGAATGACACCAAAGTGCTTCGATCCAAGTCCCTGCTAAATGAAATCGAAAGCATTTACGATGAGCACCAGGAGCAGGCGTCAGAGGAGAACACCACTCCGCCCACGGGTCCTCACCTGGCGCTGCCGTACGAGGACAGCCAGATCCTGGAGGACGCCGCGGCGCTCATCATCCACCACGTCAAGCGGCAGACCAGCATTCAGAAGGAGGACAAATACAAGATCAAACAGATCATCTACCACTTCATCCCCGACATGCTGTTCTCGCAGCGGGGCGAGCTCTCCGacgtagaggaggaggaggaggaagaggagatggACCTGGAGGAAGGCGCCCCCAAAAAGCACAACGGCGTTCCCGGCAGCGGGAGCCCCTCCAAGTCAAAGCTGCTGTTCAGCAACACGGCGGCGCAGAAGCTGCGCGGCTCGGACGACGCCTACAACCTCTACTACGTCAACAACAACTGGTACATCTTCCTGCGGCTGCACCAGACGCTGTGCTCGCGTCTGCTGCGGCTGTACGGGCAGGCGGAGCGACAGATCGAAGAAGAGGTCCGAGAACGAGACTGGGAGAGGGAGGTCCTGGgactgaagaaggagaagagcGACAATCCAGCCATCCAGCTGAGACTGAAGGAGCCCATGGACATTGAGGTGGAAGATTACTACTCAGCCTTCTTGGAGATGGTTAGGAATTTGCTTGATGGAAATATGGAGGCTTCTCAGTACGAGGACTCGCTGAGAGAAATGTTCACTATTCACGCCTACATTGCCTTCACGATGGACAAGCTCATCCAAAGCATCGTCCGGCAGCTCCAGCACATCGTGAGCGATGAGATCTGTGTCCAAGTAACGGACCTCTACCTCTCAGAGAGTGCCAACGGCGCCAGCGGAGGAACCATGTCCACCCAGTCTTCAAGGAGCTCCGCGGAGGCCATGTATCAGCGGAAAGCCGAGCAGCTCATGTCTGATGAGAACTGCTTCAAGGTGATGTTTTCAAGGCACAGAGGGCAGGTGCAGCTCACGGTGGAGCTGCTcgacacagaggaggagaactCAGACGAGCCCATGGAGGCTGAGCGTTGGTCTGATTATGTTGGACGCTACTTAAACCCAGATTCCACCACACCTGAGTTGAGGGAGCACCTCGCTCAGAAGCCAGTTTTTCTTCCCAGGAATCTGAGGCGGATCAGGAAGTACCAGAAGGGCCGAGAGCAGCTGGACAAAGAGGCCTCCGAGGGTGGCAAGAAATCCCTGGAAAAGGAGAAAATGGAGTGCATGTTCAAACTAAACTCTTACAAGATGGTGTACGTCTTTAAGTCTGAGGACTACATGTACAGACGCACTGCCCTGCTGCGAGCTCACCAGTCACACGAGAGGGTGAGCATACGGCTGCACAAACGCTTCCAAGCCTGGGTGGACGTGTGGGCCAAGGAGCACGTCTCTCACGACATGAACGCCGAGACCAATAAGTGGCTGATGGGCGACGCTCGTGAAGGCCTATTACCCTGCACCACCAGCCGCAATCCAGAAATCCTTCACTTTGTGAACATCAACAAGTACCGCGTCAAATACGGCCCACCTAGCAAGGCGCCGTAGCTGAGGAGAAACGGGAGAGAGACTGATATCTGGGGGTGTTGGGTCTGAAGTCAAAACAGGTCAAAAGTAGAGGTAGGGACGAGGGcttattaatgtgtttttaaggCCGACATGGGAGCACAATTAAGCTAGCTACCGTGTATGTTGCACCCAGGGCGGCAGGATTACTGATTTTACCAGCGTTTTTAGCTGGGCCCATTTTTTCGCAGGGCCTTTGGTGCCAAAACTTAGGAATCGTCATGATCCGGTCGCAGACCTGAGCTCTTACCAGCACTCGGAGCCACTTCTCAAACAAACTTCCCTGAGCTTTTTCTACAGGGGCTTTGCGACAGTGAGTCTGTGTGCGATAGAGTGGTGCTTTTTGTACTTTATCACAACTGGGCTTCAGTTTAGATTTTTGACTGAAAGCCATCAGAGTAAGAGCTCCATCGAAATCAATCCATCATACAGGGATTTCTTTATGATAGTGTTATTCTACAGTATCCATGGAAAACAATATGGTGGACAAGTGCACTTATTTAGAAAGAGGAAAATGTTTGAAAAGTTTTGTGTACCAGATTGAAGGTTTGGAAGAGAGCACAACAAAGTCAGAGAGATCTGGTTCTGACATTCCTGCGTTAAGGCCAAATCACAATTATGTACCTATCACGGACGAAAGAGGGTTACATTTCCTTTTCCGAAACACATGGCAGCATTATTAGAAACTGTGCCTGAGCCCCAAACAGTATTGTCGGGTTAACATCAAAAGCACtgttgcatttatttaaaaaataaaataaaattaaaaaaaacactgaaaaagaaagaaaattagcCTCACAACACTGTTTGGTCTCAGACTGTAAAATTGTACAGCTTGTGAATGTCAGATACTGACATGTATTCcagtgtatgtgttgtgtatatatatatattatatatagttcTATTAACACAAATGATCCTCGCCGCCCTGGAAGTCAACCTTTTTAAAATGCCCTCTGCCAATACACCagcttgtacacacacacacacacacacaaacacacactcgaCTCATTCTGGGAGGACTGTCCACATGCCGTTCACATTGTAAATACACTGTATATAGTCTCAGACTTTTTATGACAGATCTGTGTTGTTGTGCTAGTAATACTTTCCAAGCTTACTGTGGACTTTAGTGATGAATGGCTAAAGTTAGTATGTATATGAAAAAGACAAATGCAAGAccatttattacagtttttaccAAAGGGAGTTGATTATAAAAAATAGCGGTTTTCCCCCTTTGTGTGttcctttctttttaatttctgtAGTAAAAATGTGGAAAAGTAGAAATATATCCAGGCCTTTCAGTTTTTATATATGAGaaaaaagtttagttttttttttttcttctgaatgtgacatttggttgttaaaaaaaaatcactgccCCACTTTTGACAACCAACACCGTCCGTGGTGATGGTGGGACTCGTTTCATTTGCCTTCGGATGAATTGACTCCACAACGGTCTCACCTGGTGACGCACGCTTCCCTCCCTGGATAGATTTCTGCTGTAAACATCACCCCACACCATATTTTTGATAATGGAAGAAGTCACACAAGCATGTCTTTAGTCCCTTTATTTAGACATtatttaaagtaataataaaaacgaCATTTGTAGCCTACGGA

Function

GO: NA

KEGG:

id description
K11644 SIN3A; paired amphipathic helix protein Sin3a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113072 lncRNA downstream 85366 11061067 ~ 11061304 (-) True G83974
TU113035 lncRNA downstream 134268 11011298 ~ 11012402 (-) True G83942
TU113034 lncRNA downstream 135432 11010862 ~ 11011238 (-) True G83941
TU112979 lncRNA downstream 221652 10924503 ~ 10925018 (-) True G83911
TU112963 lncRNA downstream 233458 10900656 ~ 10913212 (-) False oaz2a
TU113141 lncRNA upstream 7788 11175449 ~ 11260961 (-) False ptpn9a
TU113174 lncRNA upstream 202738 11370399 ~ 11370649 (-) True G84050
TU113175 lncRNA upstream 226887 11394548 ~ 11394883 (-) True G84051
TU113177 lncRNA upstream 355048 11522709 ~ 11523000 (-) True G84053
XR_005639951.1 lncRNA upstream 694700 11862361 ~ 11862788 (-) True LOC120563423
XM_039807899.1 mRNA downstream 36362 11101049 ~ 11110308 (-) True wdr61
XM_039807896.1 mRNA downstream 65365 11062695 ~ 11081305 (-) True ireb2
XM_039808246.1 mRNA downstream 106898 11027303 ~ 11039772 (-) True sv2
XM_039808372.1 mRNA downstream 175141 10963692 ~ 10971529 (-) True LOC120563889
XM_039808195.1 mRNA downstream 185577 10949753 ~ 10961093 (-) True snx22
XM_039808176.1 mRNA upstream 5892 11173553 ~ 11199465 (-) True ptpn9a
XM_039809719.1 mRNA upstream 37793 11205454 ~ 11215493 (-) True snupn
XM_039809532.1 mRNA upstream 97507 11265168 ~ 11342369 (-) True cspg4
XM_039808778.1 mRNA upstream 1084923 12252584 ~ 12258264 (-) True LOC120564089
XM_039807863.1 mRNA upstream 1385822 12553483 ~ 12563363 (-) False kras
XR_005640086.1 other downstream 483992 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 714526 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 966673 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 1058070 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 1073248 10073293 ~ 10073422 (-) True LOC120564824
TU113209 other upstream 720366 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 973862 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 2062956 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 2406170 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 2863443 14031104 ~ 14033215 (-) False zgc:77752

Expression Profile