RNA id: XM_039807913.1


Basic Information

Item Value
RNA id XM_039807913.1
length 2768
RNA type mRNA
GC content 0.48
exon number 14
gene id nr2c1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20850776 ~ 20858938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAACCCAACGAGACCAGTaacaggaagggagggagtgtTCAGTAGGTCTAACGTTACAGCAGGGAAGCAACCATTACCGGCTAGCCTAGCTCGTTAGCACTGTCGTCTGGAGCTCAGCGCTTACAAACTAAAGTTGGCAAGTGTGCATGCCTCATGGGGCACTGATGTGAAGAGCAGTTGAAGAAGGTGCGTGCATTATCAGAATGGATGGACAGACTCAAAGGATTCAACTTGTGTCAGCAGACAGCAACATGGCATTAGGACACAGAATCCAGATTGTAACTGATCAGCAGACTGGCCAGAAGATCCAGATTGTTACAGCACTTGAGCCATCCTCCCCTGGAAAGCAGCAGTTTATCCTAGCAAATGCTGACTATTCCTCTGGTGGGAAGGTGATCCTGGCCAAGCAGGAAGGCTCACCCAACAAGGTCATCCTCACCACTCCAGACGGCTCTGGGGTTAACCAGTTGTTGTTTGCCTCCCCTGATTTGGCTGGGCAGCAGATTCAGTTTGTGACTGAAGGGTCAGACCAGTCCATTGGGAAGCCAGTTGTGGAGTACTGCGTTGTCTGTGGGGACAAGGCCTCAGGCCGTCATTACGGAGCTGTTAGCTGTGAGGGCTGTAAGGGCTTCTTCAAACGCAGTATTAGAAAGAACCTAGTGTACACGTGCAGGGGCTCCGGAGAGTGTGCCATCAACAAGCTCCACCGAAACCGCTGCCAGTACTGTCGACTGCAGCGCTGTATAGCTCTGGGCATGAAACAGGATTCTGTGCAGTGTGAGAGGAAGCCTGTTGAAGTGACCACCAGAGAGAAATCCGTCAACTGTGCAGCTTCCACTGAGAAAATCTACATCCGCAAAAACCTGTGTAGCCCTCTGGCTGCTACACCCACTTTTGTGTCTGACAAGGAAACTGCTAGGTCTACAAGTTTGCTTGAGTCAAGCATGTTGCTCAACATCCAACAGCCCTTCCCCAAGCTGGAAAACACCATCTTGATTCCAGCATCCCCTGACAAGGACGATCCATCCCAAGGTGACCTCGGCACGCTGGCAAATGTAGTGACGTCCCTCGCCCACCTCAACAAGGCCAGGGAGGCAAGTGACTGCAGCAATGATCTGATGGGAGATGAAACGCTTAGCAACGGGGACAGCTCGATGACGGACATCCAAGGAGATGAGCAAACTGCAAGTGATATCACTCGAGCTTTTGACACCCTGGCCAAAGTCCTGCACCCTGGTGATGGCTCAGCAGGAGAGTCCTTGGAGGCCACAATGCAGCTGATGTCAGGGGACCAGTCGGGTCCTGTGGTGGAGTTGGAGGGACCGATACTCTCTGACAGCCATATCCCTTTCAAGCTTATGATGCCTTTGCCTGTGCCAGAGTACCTCAATGTCAACTACATCTGTGAGTCAGCTTCCCGACTACTTTTTCTCTCTATGCACTGGGCACGCTCCATCCCTGCCTTTCAAACCCTTGGTGGTCAAGAAAATGACATTAACTTAATGAAAGCCTGCTGGAATGAGCTGTTTGCCCTGGGTCTGGCACAGTGCTCAAACGTCATGAACGTTGGTACCATCCTAAGTGCCATTATCAACCATCTGCAGACCAGCTTACAGGAAGATAAGCTGTCCCCAGATCGAGTGAAACTAGTAATGGAGCACATCTGGAGGATGCAGGAGTTCTGTAACGGCATGACCAAGCTGTCCCCAGACTCTTATGAATATGCCTACCTCAAAGCCATCGTTCTCTTTAGTCCTGATCACCCAGGCATAGATAATACTCCACAGATTGAGCGGTTTCAGGAGAAGGCCTACATGGAGCTGCAGGACTACGTAACCAGCACCTACCCAGAAGACTCCTATCGGTTATCCAAGCTGTTGCTGCGTCTTCCTGCCCTCCGGCTGATAAGTGCAGCTGTCACTGAGGAGCTGTTTTTCGCTGGGCTCATTGGCAATGTGCAGATCGACAGCATCATCCCTTACATCCTCAAAATGGAGTCCACCGATTATAATAGCCAGGCGGTCTCTGGGGTCTGACACACTGCCATTTGTAATTGCAACATTGGACTGTGAAAACTGGAcagccagccaatcagagtgCTCAACAGACCGATCACTAAGTGGtcacaacatactgtatttatgaCACAGCATTACGTTGCTCCTACTCCTCAGTAACCAGTCAGTAGAGCACAACTCACAAAgaggacaaaataaatcaactcCAGTGGCAAGTGAGCCTGCCAATATCTGCCCATTCAGGAACGAACCCTTGAAACCTGCATAGTAGATTGCGCTTTTTATTGTACAAAGTATTTTATGCTTCATCGCCTCCAGGCCTTTCCTTTTTCTGCAGATGTTGTTTCTACTTTGAAGGTATCAGGATGGTTTGTTTTTCACTGCTTTCCTACATGGTCATGCTTTTTAATTTTCTAATAAttatcaggaaaaaaaaaacttgtaataaTGTGAATTGATTTGTGAGACGTTATCGCAAAAGGTTATAACCTTTATTTCTTATTTGTTTGCTAATCCAAAGGATCGGGCACCATCATGaagttattgtgtgtgtatatagattTGTATATAGAATGCACCAAGAAGGCTAAATTGGGCAGCACTTGGTAATTCGTGAATTACATCTTTTGGACAAATTAATGTGGATGGAAAATGGTCGAGtcctttgaaaataaaaacacctttCAATCACATTTCTCTATCTACACAATTGATATTTCATTTTGATTAAATATCTGTAAAGAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116909 lncRNA downstream 151139 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 388953 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 586570 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 598250 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 608926 20241433 ~ 20241850 (-) True G86652
TU117040 lncRNA upstream 49627 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 243868 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 281745 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 386248 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 510801 21369563 ~ 21370658 (-) False dnajb9a
XM_039807915.1 mRNA downstream 2049 20836690 ~ 20848727 (-) False LOC120563622
XM_039807917.1 mRNA downstream 2049 20836690 ~ 20848727 (-) False LOC120563622
XM_039807918.1 mRNA downstream 2049 20836690 ~ 20848727 (-) False LOC120563622
XM_039807916.1 mRNA downstream 2049 20836690 ~ 20848727 (-) False LOC120563622
XM_039807914.1 mRNA downstream 2849 20836690 ~ 20847927 (-) False LOC120563622
XM_039807909.1 mRNA upstream 658 20859420 ~ 20877134 (-) True LOC120563620
XM_039807910.1 mRNA upstream 658 20859420 ~ 20876275 (-) False LOC120563620
XM_039808286.1 mRNA upstream 18906 20877668 ~ 20887626 (-) False LOC120563850
XM_039808285.1 mRNA upstream 18906 20877668 ~ 20887626 (-) False LOC120563850
XM_039808284.1 mRNA upstream 18906 20877668 ~ 20887626 (-) True LOC120563850
XR_005640056.1 other downstream 22173 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 591517 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1167859 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1278854 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1462201 19387822 ~ 19388575 (-) True G86402
TU117029 other upstream 18949 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 854280 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 876244 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 876244 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1830399 22689161 ~ 22706196 (-) True parvg

Expression Profile