RNA id: XM_039807942.1


Basic Information

Item Value
RNA id XM_039807942.1
length 8964
RNA type mRNA
GC content 0.48
exon number 36
gene id plxnb2b
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22431837 ~ 22554892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGAGCGTGATTATTAGAGATGGCAAGCTgggtctccctcctcctctttctcttctgcCAGTCAGTCTCACAAGCCCAGGAGGAGAGCAGCAACGTCCCCATCCTGGAGTTCACCACAGAGACCGCCATCAACAATGTGGTCCAGGACCCCCAGACTGGTCGAATCTACCTGGGGGCTGTCAACACCATTTTCCAGCTGGGGCCGTCACTCCGCCTGCAGGCTCGTGCCGAGACGGGCCCCAGAGAGGATGCCCGGACCTGTACGCCTCCTGCTTCTGCCTGCCAGGACACAAAGCCCATGCCCAACCTCAACAAGCTTCTGCTGGTCCAGCCTTCAAACGGTTCACTCATAGTCTGCGGCAGCCGCTATCGAGGCATCTGCTCCCTCCTAAACCTGACCAATGTGGAACAGCAGCTGTATTACAGTGACAGTAAAGGAGAGAGGACTTACGTGGCTAGCATAGAGGATAACGTGAACGTGGTGGGCGTTATGTCCAACTACTCAAAAGATGGGAACGCCTTCAGTGTGTTTCTTGTTGGGAAGGGCTACGGAAGCCTCGACAGTACAAAACTCATCAGCACACGAATCCTTCAGGACTTCCGTGATTGGGTCGTGTTTGAGAGCATCATTGAGGCATCTACGGTTCAGACGACGCCATTTGTTCCCAAGTACCTGCATGACTTCCGCCTTGCCTTCAAAGATAATGGTTTTGTTTATTTCCTCTTTTCAAGGACACTTGATGGTACGGATAATAAAAACCTGACCTTTGTGTCTCGTCTTTGCGAAGACGACCACCATTACTACTCCCACACGGAGCTCCAGTTAAACTGCGGCCAAAATAACCGATACAACAAAGTCCAAGCCGCGTATGTGGCCTCTCCAGGAAAAGAGCTTGCGCGGGCCATGACTGAATTAGGTGGGTATGGGAAGGTCGACTACTGGAACAAAGTTCTGTTCATGGTGGCAAGTCCAGATGACGACCCCAGCGACTCCGCTCTCTGCATGTACCCACTCAACTCCATCAATGAGCGACTGGTGGACATCATCAGCGCCTGTTACAGCGACTCGGGGAAAATATCCGGGGTCCCTGCTGTGGACATCCCTTACTCATCTAAAACTGACGAATTCTGCACATCCAAAATTGCGAAGAATACCTTGGCAAACTACAAGTGTGGCGCAGACTTTCTGCCTTCCCCTCTAGCCAGCAAGCCGAAATTTGCCCTAAAGGCAAATGCGGTGTGGACCAAACCTGGCCTTCTGACCGCCGTGGCTGTTGCTGTGGAGAATGATCACACCATCGCCTTCTTGGGGAACACCCAGGGGGAGGTCTTCAAGgTACACCTGACCATGGAGCAGCATGTACACGTACAGTACGACATGTACAGTACAACTCCTGGCGACACCATGGGAGAGAAGGTCAACAAGAACCTTTTCTTTGACCTCAGTCAAAGCCACCTTTACATTACCACAGAGAAAAAGATCACCAAGGTGCCAGTGCAGACGTGCCTCCAAAAGAAAGACTGCCAATCATGTGTGGAACTGAGGGACCCTTACTGTGGCTGGTGTGTCCTGGAGGGCAGGTGTACCAGGAGGTCTGAGTGCCGACGGGCAGAAGAGAAGAATGGCTGGCTGTGGAGCCCCAGGCAGGATTGTGTCAAGATCGTCTCCTTCTCTCCCCCGTACCTTTCCTGTAAAAAGACTCAAAAGGTGAAGATCAACATCCGCTACCTTCCTGCAATCGGGCTTGCTGACCGTCTGCGCTGCTCCATTGAGTCTTTCAATAGTGAGGGCATGATGTCTGACTCTGGTGAGGTCTCCTGCGATCTCCCCAACCCTTCGCTTATACCACATACACCTGAGGACCAAGACTTTGTGGCTGTGGCGCTCAGAATTTTCGTCAACGAGACGGTGGAGCTTGCCACGCGGGAGTTCAAGTTCTACAACTGTGCTGCCACAGTGAGGAAATCTGAAAACACACCGTGCATGTCCTGTGTGGCCAGTTTGTGGGGCTGCCAGTGGAACACACATGACCACACCTGCAGCGACATGGACGACAGCGCGGTGGGTGCCAACATCATCAAGCAACGTCAGGGAGCGAACTGTCCTCGGTTTGAGAATCCAGATCCTGTGCTGATCCCGGTGGGCTTCAAGACTCGTATCAGCTTTGAGGGAATGCATTTGGACCTCTACCAGGCTCGTGTTTTCACCATCGGCACTGAGCTGATGAGAAATGTGGAAGAGGAGGTTCATTTTGAGGACGGGCCATTCTACACCTTCAGCGGCTTCGATTTTTCTTACGACAAGTCACCGGAGACCAATGTTCTCTTCTATGTGAAGGACAAGGAGTCGGGCAAGAAGATGGACAGCACGCTGAACGTCACCCTGTACAACTGCTCCATGGGGAGGGAGGACTGTAGTCTCTGTAAGAACGCAGACCCAAAGTACAGGTGTGTGTGGTGCGCCAAGCAGAAAGCGTGTGTGTACGAGAAGCTGTGCAATCCTGACCAGCAAGGGTCCAAGGATCTTTACAACATGGAGTGCCCCGATCCCCAGATCACTGATATCATCCCTCGTTTTGGCCCCCTGCAGGGAGGAATCTCCATCACCATCCGGGGCTCCAATCTCGGCATCCAGAAGGAAGACATTAAAAGCATAAGCGTGGTCGGGGTGCCCTGTATCCATCGGCAGGAGAAGTACTCTGTTTCCACAAGCGTGGTGTGTGAGATTGGCCCTGTTGACCCCAAGAACACCTGGGGccaggtggaggtggaggtgaagGGGGGAAAGAGAGGATCCTCCTCCATTGTCTTCACCTACAGGGACCCAATTCCAGAGATGGTGAAACCCTCAAGAGGTCCGAAAGCTGGGGGCACCCTCATTACAATTTCTGGAACATTTCTGAACACAGGCAGTATGGATGATGTCCAGATTACCATCGGAGGGGTGGATTGCACTGTGGAGCAATTCGGAGAAGAGATCACCTGCAGGACAGGGGAATACGGAACAGATAAGGTGCCCTCCGACCCTCTCACCATCACAGTGAGATATGGAAAGAGTACCACAACAACCATCCCAAGTGCCTTCCAATTCTTGGAAAATCCCATcatgctggaccaccaccccaAAGAAAGCTTTGTCTGtagagggaGAAACATTGTGGTGACCGGCTCTGGCTTTAACCTAATCCAGACTGCAGTCCTGAAGGTCCATGGAGATAACTTAGAAGCTTTTGAGGAAGCCCACGAGAAGAACGACACAGTCATCCAGTTTTTGTCTCCAACGGTAAACAGTTCCCTGAACCAGCCCTTTAAAACCTACATCCAGCTTGACAACTGGGAGAAGGAACTGAAGCCCTTCGACTACCAACCTAACCCCAGCTTCGACAAGCTGACCAAGAAGGTCATCACTGAGGCCAGCATCATCATCGTCACTGGTCGAGGATTCTCCAAAGCCATGACGGCCAAAGAGGCTCAAGCATTTGTGGGTGATGTTCCCTGTCTGGTCAACACGCTTCAGGATGACAAGCTGTTTCTGGACCCACCTTCCACCATGCCCAGCGCTCGCTCCAGGCGGCACCGCCGAGACACCCGGCCCGAGCTGCTGGACTTAACGATCAAGTTTGGGAAAGGGGAGTGGGTGGTGGACTCGGTACAGTACGAGAAGAAGAATGATTTATCACTCTACATCATCATCCCTGCTGTCATTGTGCCCATGTTGCTCATCATCGCTATCTCTGTCTACTGCTACAGGAGAAAGAGTCAACAGGCAGAGAGGGAGTACGAGAAGGTAAAACATCAGCTTGAGAATCTGGAAGAGAGCGTACGGGATCGCTGCAAGAAAGAATTCACAGACTTGATGATCGAGATGGAGGACCACACTAACGAACTGAGCGAGGGACGAATCCCATTCCTGGACTATAAAACCTACACCGACCGTGTCTTCTTCCTGCCCTCGAAAGACGGTGCCAATGATGTGATGATCACAGGAAAGCTCAACATCCCAGAAGCTCGACGGGCCACAGTGACTCAGGCGCTCAACCAGTTCTCCAACCTCCTGAACTCAAAGACCTTCCTCATTAATTTTATCCGTACCCTGGAGCGCAGTCATGACTTCAACGCCAGGGCCAAGGTGTACTTTGCCTCCCTGCTGACCGTGGCTCTGCATGGGAAACTAGAATACTACACCGACATTATGAGAACACTGCTGCTGGAGCTGATGGAGGAATACGTCCACAGCAAGAACCCTAAACTCATGCTGCGCAGGTCAGAGACTGTGGTGGAGAGGATGCTGTGTAACTGGATGTCTATCTGCCTTTACCAGTTTTTGAAGgaCTCTGCAGGCGAGCCCTTGTATAAACTGTTCCGAGCCATCAAGCACCAGATTGAGAAAGGGCCTGTTGACGCCAGAGTGAAGAAAGCCAAGTACACCCTCAACGACACGGGCCTGTTGGGCGACGATGTAGAGTACTCTGTCCTGaCCCTGCAAGTGCTGGTGCAGGGCGAGGGTCCAGATGTGACGCCCGTCAAGGTGCTGAGCTGTGACACCATCTCGCAGGTGAAAGAGAAGATCATAGAGCAGGTGTACAGGAACCTGCCATACTCCCAGCGGCCTAAGGTCGACAGTGTCACATTGGAGTGGCGCCCAGGCTCAACAGGGCAGATTTTGTCAGATCTGGACTTAACTTCCCAGAAAGAGGGCAGGTGGAAGCGCATCAACACTTTGGCACACTATAACGTGCGAGATAACGCCACATTAGTCTTGTCAAGCGTGCTTCACATTCAGCAGAACTATGACCAGAACCAGGAAAACCATGAAGAGCGGAATGCTCTGTTGGAAGATGACAAGGTGTTTCACTTGGTGAGGCCGGCAGACGAACTGGATGAGATGAAATCTAAACGAGGAAGCATAAAGGACAAGTCGATGACCAAAGCCATTACAGAGATCTATTTAACAAGACTCCTTTCTGTCAAGGGAACACTGCAGCAGTTTGTGGATGACTTCTTCCGCAGCGTGCTGTGCTCTGGGGCAGTGGTGCCACCGGCTGTCAAATATTTCTTTGACTTCCTGGATGAGCAGGCgctgaaacacaacaatgtggaTGAGGAGACCATCCATATCTGGAAGACTAATAGCCTTCCTCTGCGGTTCTGGGTGAACATCCTCAAGAATCCCCACTTCACATTTGACGTCCACGTGTCTGAAGTGGTGGACGCCTCGCTCTCTGTCATCGCCCAGACCTTCATGGATGCCTGTACCAAGAGCGAGCACAAACTCAGCCGGGACTCTCCAAGTAACAAACTACTCTATGCAAAGGAGATCTCCACCTATAAGAAGATGGTGGACGAttacTACAAGGGCATCAGGCAGATGGTTCCCGTCAGTGATCAGGACATGAACACTCATCTGGCAGAAGTGTCACGGTCTCACACAGACAAACTGAACACACAAGTTGCTCTCCATCAGCTTTACCAGTATGCCAGCAAATACTATGATGGGATCATCGCATCCCTAGAGGAGGACCCAGCTGCCCAGAGTAAACAGCTGACCCTGCGGCTCCAGCAGATAGCAGCCGCCCTGGAAAACAAAGTGACTGATCTCTAACCCACCaagtggagggagggagggagtaaGGGGAATGGTAGGATACCGCCAGTGACTGCAGGGGCTTATTTCTTCTTTTAGAGAATAAAACATGGAAATAAGGAAAGGTGATAAGGGACTCATATTGTACAACTTGGCCTTGGGACAATtttctgtgctgtggagtaacaGGGACTAATTAAATGCAGATAGAGAGCAAAAAAGGGAAGAGAATGATGGGTTACACTGTCATTGGTACGCCTTAAAGCTCACTTGCCGAACCTTAAAGGTCTGCGCGCTCACTCTTGCTTCACTGAATATTGCTCCCACAATGCAGTGCGGTAGACCTCTCACTGAGAATTAAGCCCCTCCGTGGAGCACTGGCACAGGTGATAATCAGATGTTCAATTTCTTTCTGTGTAGAAAAGGTTTTAAGaattgtattatatattttttttattgtgcagtCTTTATGCGGAAAGCTTTATAaggaaaaaaattatctttttaaatGGATCACCTTGTGGTGCGGATAGTGTTTTTATTAGCCTGTGTGTGCGTAGATGTCTGTGTGAAGTACAACATGTGAACAAGAGTGTGCATTGCTAgatttgagtgtgtgtgattgtgtgggaatgtgtgtgcacacacaggaTGCCTACTGTCAGGCGTGAGGGCGAAGGGACGCCtgctttctgtcattttattccCCCATACCCAGTGACACACTGGAGCCTGCGCTCTCACCGAGCTCACCAAAGGGTCCTCATAAGGACGCTGGTTAGCAATTTACAGGCTCATATGACTGACAGGTCACCAGTAGTTTCAGAAATGTTTGAGTTAAATTATTTGCTTTTGACTCAGATTTGCTTCAAGCTGGATTGCCATTTGTGCTTGTGGAAATCGATAATAGCCCAGTCTGTCTCCCTTTATTGTACAGTGCCATGATACATTCCACTTCAACTAAAGCACAGAAGGACATTTCAAAAGTGTTTTACGACATTTCAGTTATTGACTGTTtctaaatatttttctttggcataaaacctccttttttttttttttaagtgtcagCAAAAAGCAACTTTATTCTGCTATGGAGCCATGCCACTCATATTAGCCCTGCAATAATGACAGAATACTATGAGCCACAATTGACAGTTACATTAGCTCACTAAATGTATTCAAATACAGTAGCAATTCAGCAATATGTTAGAGAAATTTCCAAATTGATTCATGCATTGTTcagcgtgatttatggttctgcggaggctccacacagagctttcgccgtagcctacgtaagtggcctgaagtttatacttgtgcgttagtgtgtgcgtcgatctctttaagagaatagcagggccgacATGTGTAGGTGCATGGGGAGCgtgtggtagagtgagtgagCGAGTACCAGCtatagagtcatagtgagagaaacaaagtgtctccccttgtgctttctgaccacgtgggaaatctgtagcaggaaaagttaatcctctccttgatttcattttgtttatggagaaggagaacccggaaatgagtcgggggaaatgcaacgctaccaagccacggccaagcgACGTGTGTCGCTGCAACGTGTATGGTTACGTTTTTCGAGAGGTGTATGCAGGCTAAGGCTTCGGGTCTGGCGTAGGGTCCATATTTCCACATACTTACATACGTAGCCACGGCAAAGATTTaatgcagaagcataaatcacgctttagtGTTCATGATTTTTAGTGCCATTTGTTATTACTCTTGCAATGTTCCAAATAGTCATCAAGCAATCTGCCTCTAAAGCTATGAAATagcctgttgctgattttaattacctgTTAGAGATGCAGTTGGTAATTAAATGGTATGTTTTGAACAGATTACTGTGGTTTTAGCCTTTGTGTGATGTTTGGGAGGTCAGGTTCAATCATGTACATAAGTGTTATAGTAACTGAGATGTTGATATGTCCGTGTCAGAGCCGAGGTGTCGACGGGGTAGGAATGAGGGTTTAATATTTTTTGGGCCGTTAAACGCCACCACACTTCATCCCTAAATTGTTGGTTTTGCTGATTGTACTTCCTGTATCTGATCATGGACGTGTATAGTTGACAGAGCATAACGGGCTCCAGAGACCCCAGAATGTTAACGATTCCTGCCTTGGCTAGAGAGAGGTTTGCACAGACCTCgagcctgcctgcctgcctgctgtcTCAGCATGGCACCTTGGCATCTCGACCAACAGCACTTGGCACTGCCCACTCAGCGCAGTGCAGAGTGGCACTCTGTATAATGGAATCAGCAGGAGAGGCTTTTGATCTTAATTGCATGCCGACTGCAGACTCCATCCTCGTCTCCGCTGTTGTTTACTGCTGACTCCTGTCTCACTGACAGAGTTGATGCAAGAAGCTTCTTTCAGAGCCTTTCTTTAACCAAAAATGTGCCTTATTAAATAGGATGATACATATATATTGTTTCTAAATTATTCTATTGGTAACCTAGGTGATTATAATGACGATAGTGCTATAGACACAGCAATGTATTTGGACTTGTGATATTATGTGTGCTGTCTAAAACGCTAGATGCCCTGCTGCAGCCATGTGCGTGCCAATAGGCTGAAGACATTTCAGTATGATTTCTTTTATGGTTGCAGTTTTGATGTGTGCATTTCCTTTGGGTGTCTGTGGCGTGTGCTTAGTAGGATTTTGGTGGCTAAGGCAAAAGGccaaaatgaataaatgtaaaacaatgTGGCCAATGTGATTTGGGTTTCCCTTGAAAATGTCTGGCATTTCTAAATTAGTCTGAAATCAAAAGGGTGTCCTTATGTAGATTGAATATAGCGCAAAATTGTTCCaacggtgtttttttttttttttttgccctgtGTTTCTAAGCTGTTCAACAGTGTGTACGATAAATGACTATCTATACTCGACAAATGACTTTTCTTACTGCTGTgcagttatttttatttcttgtttcctATACCATATAAATCTTTGTAAAACATGTTGAAATACTGTATTCTAACTGTATAATCCTATGCATTGAGTCctggtacaaaaaaaacaaaagagaaaaaaagctgttTGTGCAGTTGTCGAGacttttttccattttgaaaCTTGTGAATGTGCTGTAATGATAAAAGAAACTAGGACACTCCATTTTCAGTGCAGGACCATTAATGGAAGCCAACGTTTTCCTCCCCATCCAAGGCAGCTCAGAAGATTCTCGATCTTGTACCTGATCTGGTTGTACTGGATGAACTTCATTTTACAAAGGTTGTGTGTGGACGGAGTAGTTACCCACAGATTTCATCATACACTCCTCCGTGAATAAACTCAGAGACATATACGCCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117635 lncRNA downstream 41621 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 64859 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 76641 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 325582 22105880 ~ 22106255 (-) True G87254
TU117537 lncRNA downstream 349299 22070958 ~ 22082538 (-) True G87249
XR_005639987.1 lncRNA upstream 51126 22577017 ~ 22682276 (-) True LOC120563633
TU117745 lncRNA upstream 235294 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA upstream 235294 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA upstream 308714 22834605 ~ 22837835 (-) True G87400
TU117838 lncRNA upstream 623228 23149119 ~ 23149344 (-) True G87464
XM_039807938.1 mRNA downstream 2899 22400749 ~ 22428938 (-) True tubgcp6
XM_039809372.1 mRNA downstream 64974 22347170 ~ 22366863 (-) True LOC120564428
XM_039808211.1 mRNA downstream 166040 22240065 ~ 22265797 (-) True mov10l1
XM_039809373.1 mRNA downstream 194910 22234736 ~ 22236927 (-) True szl
XM_039809411.1 mRNA downstream 198238 22230931 ~ 22233599 (-) True LOC120564446
XM_039807955.1 mRNA upstream 165157 22691048 ~ 22706196 (-) False parvg
XM_039807953.1 mRNA upstream 165157 22691048 ~ 22706196 (-) False parvg
XM_039807954.1 mRNA upstream 165157 22691048 ~ 22706196 (-) False parvg
XM_039807952.1 mRNA upstream 165157 22691048 ~ 22706196 (-) False parvg
XM_039807948.1 mRNA upstream 167820 22693711 ~ 22706296 (-) False parvg
TU117418 other downstream 692509 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 692509 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 718283 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1552199 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1603234 20806882 ~ 20828603 (-) False LOC120564033
XR_005639990.1 other upstream 163270 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 165157 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 968439 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1213091 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1379211 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile