RNA id: XR_005639989.1


Basic Information

Item Value
RNA id XR_005639989.1
length 2888
RNA type transcript
GC content 0.41
exon number 15
gene id parvg
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22689161 ~ 22706296 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGCTACGTACAACCCTCCATTTCTTATATCCCTGTTTTGACAGTTGGTGGGGTTGACAGTTGCGGAACTCAATTCAACTGAAGTCATTCTGTCGAGTCACTCTCAAGAGTGCCGAAGGAAAAGAAAAGTTTCACTCTCCAGATCCAGGAAACAACAGTTTGACACGCTCCAGGTTTTGCTGAGGAGAAGCGATGGAGGCTGCTGTATTTGAGTATCACAAAGAGGATGACCCTGTGGACGTTGAATCTTTTCAGGgagagaagcagAAGCTTATTCAGCCGGCGTCTTTAAAAGACCCCAAATTTGAAAAGCTAAAGGAGGCACTGGTTTGTTGGATCAATAGCACTTTGAAACCAGATCACATAGTGGTTCAGAGTCTGGAGGAGGATCTGTTCGATGGCCTGGTGCTTCATCACCTGCTGTCCAGATTGGCTGGTGTGCACATGTCTGTGGAGGCTATGGCACTAACCAGCCCTGCTCAGATCCGCAAGCTGGGAGTGATCCTGGAGGAGTTGGACAAGAGACTGGGCCTGCAGGACAGCAGCCAGATCAAGTGGAACGTCAAACTCATCCACAACAAAGACCTTCTGGCCACTATTCATCTGCTGGTTGCCATGGTGAGATCTTTCCAGCCTGAACTGGGTTTGCCACCAAATGTAAAAGTTGAAGTTATAGTTTTGGAAGTGAGCAGAGGTGGAATCAAATCAGATGTACAGACGGAGGTCCTGACAGAGGAAAgGGATGCAGGCTCAGACTCTCTCAACAAGACTGAAAGGGAAGATCCCATCGAGCAACTGCTGAAGCTTGAGGATCACAAGGTCAACACGGTGAAGAAGGCCATCTTACACTTTGTCAACCAGAATATGTTGACCATGGGTCTGCAGGTGGCTGATATGGACAAACAGTTTGCTGACGGTGtgattctgctgctgctgctcggaCAACTGGAAGGCTTCTTCATCCCGCTCTATGACTTCAACCTGACACCTGTCAATCACTCTGAGATGCTCCACAATGTGACCTTGGCCTTGGACCTCCTTAATGACGCAGGCCTTCAAGTGTCCAGCATTGATCCACAAGGACACCACAACACCACTGACTCGTCAACATGGTAAGACAATTACTGTACAGAAATAACATATTGCCTATTAAGCAAGAGCTGAGAATGTTATAGGAatcattttctacatttttccaaggctACTGTGAGTATATATTATTGCCTGAGGTGACCAAACCAGAGGATTTCTCATAAACTGACTTTATTTTAtaccatgttttatttttttttgagaaaacaaATGATGTCCCCCTGCAACACTGAAGCCCATCCAAAATGTTGATGGAAAACATGAGTCATATCTGCCTAACTTGTCACACTGAACAGATGCATCTCTCTGTGGATGAAAAGTGGAGCAGAGCTAACAAAGCAGCATCACTCTGAGTATTCAGCTGCTGTATTGTATGTGCGTATGTTTATGTCAGTTATCACAGAAGTGACAGTATCATGGGAGTGTTAAACCTAAAGAACCATGAGACTTAACACTACTGTTGTAATTAATCCAAACAGCTCATCCAAGATGTGATCAACGCAGTCAAATTTATCTGTGTAGCACATTTTATACACTGTCCATTACTCAACATAAAAATTATGAGAGACACAAGATAAATAATTACAAAAAGGATATATGGGGTTTCAAGATGATCAACAGAACAGTGGTGGAACAGCTTAGTATTCATTGACAAATGCAACGTGTGATGAGTCCAGAGTGGACACAGCTTCATTTTAAAAGCCGCTATAATCCATATTTCTATTTTAACAATGGTTAAAATtactatgtgtaatgtgaaaggcaGCCGCTTTTGGCAACAAACCCACAGTTTTATCACCCTCAGCTCTACGGAGCATGGTGTCTTTTTAGTGTCATTATCCATGTTCCCATCATTTTATCAGCATTTTAATGCTGCACAGCTGTATGGAAGCAGCAAAATTTTATAATACTTCATCAGTTGCGCAAAAAAGTTGTAATGGTTCGCTTAAGGTGGTTTTTGCCTTTGGCGAAAAAGAGTTTCTGCTACCCCCaagtggcaaaaacaaaacctcataaagtgaaattttcatgccatgggacctttaaaggctCATGAGGTAAAAGGGTTGGGCTCTGGGGACAACTGgattaagatttaaaaaaaaaaaatttgtaaaTGAAACTGCAAGGGGTAAATCAATCAAGTTAAAagtcgtttttattttttatggagctagaacagtgacctgtggtattgaaaataaaaattggcattgaaacaacaaatattggcactgaaaaatgttgaactgaaatataaaacagaaacattaaaaGTTATAATCTCACAATCCTATTATATTATTTcaattagacatttttttgcattatgataggtttttcaatTTCAATGTCAATTTTTTCTTGATATCTGTCTTTTTTcagtaacatgtttttttttacgctgtcacggcttttcagtttcaactttctgtcacccTTTTGGTGTAGAGAGGAGGGGCTTGAGGGGAGGGCCAAAGAGGGCACGGTTTACATATAATTTGCATATTGGCGAGAGACCGCACCTCCACAGACATCCTCACAGATGCATTATAACCACATATCTGCAATGGCTTCCTTAAGTTCACCTGGAAACTCCAAATCTCAAGGTGGAGCACTTGTGCCGTGATGTGTCTTTAAGAGGATTGCCTGCTAGATCCCCagtctgcatttattttgtgcccactatacagtatatttgtacCATGCCTCCAGAGGAACCTTGACACTTTCCCAGACTTCTCCAGGACCCTGTGCAGCTTAAAAATGTTCaattaaaccttttttaaatttt

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0007155 cell adhesion biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639987.1 lncRNA downstream 8772 22577017 ~ 22682276 (-) True LOC120563633
TU117635 lncRNA downstream 300832 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 324070 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 335852 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 584793 22105880 ~ 22106255 (-) True G87254
TU117745 lncRNA upstream 54989 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA upstream 54989 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA upstream 128409 22834605 ~ 22837835 (-) True G87400
TU117838 lncRNA upstream 442923 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 492376 23198572 ~ 23217138 (-) False LOC120563856
XM_039807941.1 mRNA downstream 136156 22431837 ~ 22554892 (-) True plxnb2b
XM_039807940.1 mRNA downstream 164852 22431837 ~ 22526196 (-) False plxnb2b
XM_039807942.1 mRNA downstream 165157 22431837 ~ 22525891 (-) False plxnb2b
XM_039807938.1 mRNA downstream 262110 22400749 ~ 22428938 (-) True tubgcp6
XM_039809372.1 mRNA downstream 324185 22347170 ~ 22366863 (-) True LOC120564428
XM_039807963.1 mRNA upstream 690 22706886 ~ 22725459 (-) False parvb
XM_039807965.1 mRNA upstream 690 22706886 ~ 22721278 (-) False parvb
XM_039807964.1 mRNA upstream 690 22706886 ~ 22721248 (-) False parvb
XM_039807962.1 mRNA upstream 690 22706886 ~ 22720248 (-) True parvb
XM_039807960.1 mRNA upstream 690 22706886 ~ 22720245 (-) False parvb
TU117418 other downstream 951720 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 951720 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 977494 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1811410 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1862445 20806882 ~ 20828603 (-) False LOC120564033
TU117944 other upstream 788134 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1032786 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1198906 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 1202973 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 1202973 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile