RNA id: XM_039807956.1


Basic Information

Item Value
RNA id XM_039807956.1
length 2414
RNA type mRNA
GC content 0.50
exon number 20
gene id hdac10
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22726485 ~ 22735827 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACTAGTGTGACTAGCATAGATATATGTGACTAGTATGGTAAGGGTAAATGCGGAATGCAGAAAGAAAGGACGTCCCTAGTTATCTTACCGGTGCATCCATGCTCGGTATTCATTATACTATACGTTACACCGAACTTGTCGGTGAAAGTCAAAGTTTGATTACAGCAGCTTACTCATTGATTTTCCgtctttgtctttttctctaACTTACTTCATTTTATATTAGAAACAGTTTGCTACTACAGGAGGAAGTCGTTGCACTGCAGAAACGTTGCCATATGTGTTGCAGTTTGACTGGTCTCAGGAATAATGAAGATGGGAACAGCATTGATTTATGATGAGGAGATGACCAAATACAAATTGCTCTGGGTTGACCCTGCATGTAAGATTGAGGTACCCGAGCGTCTGACAGTGAGTCATGAAGCTTTGATGAAGACCGGTCTTGCTGATCGTTGTGTCTCCGTACCAGTCCGCGAGGCGACGGACGCAGACATCCTGCTGGTTCACAGTGAGGAATACTTGGAGGCGGTGAAGAAGACCCCGTATATGACTCTGGAGGACCTGCAAGAGTTCACCCTGCAGTATGGTGACGTCTACTTCCACCCAAACATCTATCACTGTGCCAAGCTGGCTGCAGGCGCCGCACTGCAACTTGTGGACAGTGTTATGATGGGGAAGGTGAGGAACGGCATGGCTCTGGTCAGACCACCAGGACACCACAGTATGCGCAGTGCTGCCAATGGATTCTGTGTGTTCAACAATGTGGCCATAGCAGCTCGATATGCCAAGCAACAATATGGGGTTAAAAGGGTGTTGATAGTTGACTGGGATGTACATCATGGTCAAGGGGTGCAGTACTGTTTTGAAGATGATCCAAGCGTGCTCTACTTCTCATGGCACCGCTACGAGCATCAGAAATTCTGGCCTCAACTTAGAGAATCAGACTACGACAGTGTTGGCAAAGAGAAAGGGGCAGGATTCAATATAAATGTCCCATGGAACAAAGTCGGAATGAAGAACAGTGACTATCTTTCAGTCTTCTGTCACATCCTTCTGCCAGTCGCATACGAGTTTAGCCCAGACTTGGTCCTGGTGTGTGCAGGCTTTGACTCAGCCATCGGTGACCCAGAGGGTGAAATGTGTGCCAGCCCGGACATCTTTGCCCACCTCACTCACCTCCTGATGAACCTCGCAGGAGGGAAACTGTGTGCTGTGCTGGAGGGAGGATACAACTTGACTTCCCTCCCCCAGTCTGTGTGTCAAACAGTTCAAACTTTGCTTGGAGATCCTGCGCCTCGACCGGCAAATCTCGATGGTCCCTGTGAaagTGCACTTGAGTCCCTTCACTGTGCCCGATCAGCTCATAAGCAGTACTGGTCCTGCCTCAAACATGCAGCTGAGCTGCCCACTTCTGATGTCACCACAAAGCGGATTAAAtttgcagaagaagaagaagaagataagCTGAAGAAGGTAGAAGAGGAGAAAAGTGCAGAGGAAGAAGTGTGGCCAGAGCCTCCAAAACGTGTCGCTCCTGCTCTCCGCACTGCTTTAGTTCTCCCTAATGGCGTGGCTTGCCCGGACGGATGTAAACGCTTCAGCTCATCAGAGGACCTGGTTCTAATCAACAAACTGAGGGAGAATTTCCTCAAAGATGCAGATGACAGCAATGCTCTCACAACCCTCTCCAGTCTTATTTCCCTTGTAGAGAAAATGGAGAGGAATGAGATCTGCAATGGCTTGGCGCTGGTCCCTGACGTCTCCATGGCGATGATGTGTGTTGTCCAGCATGCTGCAACTGCTCTCCGCAACAGGGTTTTGGTCGTGTGTGTTGGAGATGCGGTGGTCTCGAGTCACGGCACAGAGGAAGGGAAAACACTTGTGGTGCAGTTCAGCAACAGGGAGCCAGAGGAACAGAAATGCAAATATCACATTCCTGTGTGTCTGAAGAAGGGCTGCAGTGACGTGTCAGGGTTTACACAGGCTGTGTTGGGCCTCCTTCTGCCTCTGGGATATGAGTATGACCCCAGTCTGGTTCTGTTGGCTCGGACGCCAGATAGCGGGCTGTGCGACAGTGTGTGGCAACAACTAACAGGCCTGCTGCAGGGCATCGCACAAGGACACACACTGGTACTCATGCAGGAAGGTGAGACGTCATGTGTCGGCCCCACAGCCTCCTGTCTCTCCGGGGACGCTGCCCCCTCTCTAGGGAAGCTTCATGCTCCTCTACCAGAGGACGTGGAGGCGCTGGAGAGACTGAGACACAGACTGCAAGTGGACTGGAAGCTACTGCAGACTACAGCACCAGAGACTGGAGGAGGTGATGAGCACTGAAGCCAATCCTGCTTCTTTTTTGTCAAGAAATCAGTTGAAGCACGTAAATCAAATGTCTTaataaaatgttgtattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639987.1 lncRNA downstream 44209 22577017 ~ 22682276 (-) True LOC120563633
TU117635 lncRNA downstream 336269 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 359507 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 371289 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 620230 22105880 ~ 22106255 (-) True G87254
TU117745 lncRNA upstream 25369 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA upstream 25369 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA upstream 98789 22834605 ~ 22837835 (-) True G87400
TU117838 lncRNA upstream 413303 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 462756 23198572 ~ 23217138 (-) False LOC120563856
XM_039807963.1 mRNA downstream 1026 22706886 ~ 22725459 (-) False parvb
XM_039807965.1 mRNA downstream 5207 22706886 ~ 22721278 (-) False parvb
XM_039807964.1 mRNA downstream 5237 22706886 ~ 22721248 (-) False parvb
XM_039807962.1 mRNA downstream 6237 22706886 ~ 22720248 (-) True parvb
XM_039807960.1 mRNA downstream 6240 22706886 ~ 22720245 (-) False parvb
XM_039807603.1 mRNA upstream 559 22736375 ~ 22739778 (-) True aplnr2
XM_039809502.1 mRNA upstream 10673 22746489 ~ 22757990 (-) False pus7
XM_039809500.1 mRNA upstream 10673 22746489 ~ 22757990 (-) True pus7
XM_039809501.1 mRNA upstream 10673 22746489 ~ 22757960 (-) False pus7
XM_039808041.1 mRNA upstream 102162 22837978 ~ 22843763 (-) True adck2
XR_005639990.1 other downstream 20289 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 20289 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 987157 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 987157 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 1012931 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 758514 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1003166 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1169286 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 1173353 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 1173353 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile