RNA id: XM_039807962.1


Basic Information

Item Value
RNA id XM_039807962.1
length 3813
RNA type mRNA
GC content 0.41
exon number 13
gene id parvb
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22706886 ~ 22725459 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTACATACATTTGTGCAATGAAGCTTGCATAAGATAAATGTTCTTGACTGCAGGCTTTGATTTGTATTGAATTAGTGTAATTCTGTTAACAGGAATACAGCCGCTGTCTGATTGATTATCCACTGCAGCAAAACATATTAAAGGCTCCATTCACATGCTCAGTTATTCACAGAAACAAGTCTATTCTCTTATATTGCTGTGAAATTACTAGACAGCAATTTTAGCAGTcagttacaacaacaaaaacctgtACAGACGTCCTTTTTACACCATGCTGCATGCATTTATATGGATATCGAGTCGACACTATACCTGTCATAGGTCAGTGAAGTTGGTCCTGTGTCCACTGTCTAACAGCCCAGAGGTTTACTGGTGTTGAGTTGCTTTTGCACATTTATGTCCAGTGTGGTCCTTCTTGTCccaagcgcgcacacacacacacacacacacacacacacatacaacaaacacacacacacacacacatacatacaacacgCCCCCCTCAGCGTCTCCTGTAACTGGACCGCAGACGTGGGGTGGAGGGTTGTGACAGAAATAAACCGACTAcgattcatacacacacacacacacacacatatacatacacttcTACATTTACCTTTGCTCGGTGCAATCGTAGGGAATCCGGAGGTTTATAGTGGGGACATGGCGGGGCTGCTGTGTGGGACCAAGAGGAAGAAACAAGTGAGTGATCTCCATGAGGAGGGGAAGAATGCCATCAATGCTCCCATGCTTCCTATAGGGACAGACATCCATCCAGAGGACACACTGATggAGGAAAACGCTGAGAGGATCATGTTGGACCCAACATCGCGGGAAAATCTTAAATTTAAAGATCTTTTGAAGGTCCTGATTGACTGGATCAACAGTGAGTTGGAGGAAGACAGGATCATAGTCAAAGACCTGGAGGAAGACTGTTATGATGGACAAGTGCTCCAGAAGTTATTTGAGTTGTCAGGCAGGAAGCTGAACGTGGCCGAGGTGACCCAGTCAGAGATCGGCCAAAAGCAGAAGCTTCAGACAGTTTTGGAGGCCGTCAACGAACTGCTGAGGCCTCACGGCTGGACCATTGAGTGGAGTGTGGACTCTATTCATTCAAAGAACCTGGTGGCTATTGTCTACCTGCTGGTGGCTCTCGCGATGCATTTCCAGGCCCCCATCAGACTGCCTGAGCATGTTTCTGTGCAGGTGGTCGTCATCAAGAAACGAGAGGGCATCCTGCAGACGGCTCTTGTGACCAAGGAGCTGACGAGCACCACAGAaatgATGATGGGAAGGTTTGAGAGGGATGCGTTTGACACTTTGTTGGATCACGCACCTGACAAGCTCAACGTGGTGAAAACGTCTCTCATCACCTTCGTGAACAAACACCTGAACAAGCTGAACCTGGAAGTTACTGAGCTGGAATCTCAGtttGCTGATGGCGTGTACCTGATATTGCTGATGGGGCTGCTAGAAGACTACTTTGTCCCTCTGTACAACTTCTTCCTCACCCCTGAGAGCTTTGAACAGAAGGTCCACAATGTGGCGTTTGCCTTTGAGCTGATGCAGGATGGAGGCCTGAAGAAACCCAAAGCCAGACCAGAAGATGTTGTCAACCTGAACCTCAAGTCCACCCTCAGAGTCCTCTACAACCTGTTCACCAACTACAAAAACTCTGATTGAACTTTTCCAGTTTCTCCCCCCTATATACTTTTGATTGCTGCCCTGTGCCTGCACAGATATTATGCATTACAGTCTGGACACTGGAGGAGACCAACTGGGACTTAAAAATCATTATTATGTGGGACTTAAAAAGCCCCATGGAGAGTAGCCTGAAAAAGGCTCTTAATGTCAGTATTTAATTTCCTCCAAATGTCAGTACTTATTTATTCCTTCCTCGAATGTTAAATGCAACCCAGGAAACCCTTTAACCTTTAGCCTGCTTTTGAATACACACAATAGCCATGACAGGAAAACGAATGTTAAAACTGGAAAACATTTGCGTTAACCTGGTTACTCTCCAGAATATTTAAGAAAGTTGAAATGCTGTTGTATATTATAAAGTATCTAAAATGAATGTGTAAATATTAAAAGAAtagttttgggaaatacacatatttgctttcttgccaagagttcgACGAGAATATTGATACCACGCTCATGGTTTATATGCTAAATATTAAGCTAACATTaaaaccagcagctggttagcttagcttagcataaagactgcaaACAGGGGAAATTGCTTGTCTGGCCCTGATcgtaaataacaaaatatgcgtaccaacacctctaaagctcatgTAACacaaactgtaaacacaacaagctacagaaaaacattttaaagtttcagGTTGGACAACAAACTGCGCACCATAGAAAAGTTGTGGTGCCTTTATTTTATGCCCAAAACATAATTGCCATGTAATCTATATCTAATGTATAAAAATGTAGATACTGTAGCAGACATTTTGCCTTTGGATAATCTTCACAAAATGCAAGAAGAAATCAACAAAATGTATAATTTCagctttcttctttcttttcgtTTGGAAAAcctaattataattatttactGTCTGTAGCTTCTAGAAATAACtattaaatacatttgattATGTGCATTTAATGTAGTTTAATAACCACATCTAATTGCATGACATCAACTAGAGTCAAAAGCTGAAGCAGTTATACTGCTAAGATAGTACTGTTAGCAAGATTAGCTAGCTTTTTGCTACATTGTGACTGGATTTAGCTGCTGCTTCATTTAATAATGtggaaaacaaactaaaataccAAGATTAATTAACAGATAACTAGCTAGGGAAAAAACAataagtacattttgttttaagtaagtaaagtttcatagataaaaatcacaaagtgctttacaaggtacactcacattaaaatacattgaataaaattaaaacatttaaaaagtcaaagaTAAATTAAACCCAGTCAACTAAAAGCTTGTTTAAATAACAGTGTCTTGAGTTGCCTTTAACTAAGGCTAGCTGGCTTGTGGCTATCTGACCAGCTGGATTTCAGATGATATAGCGCTCTTTTTTGTAGCTGTCTCGTTGGCTGTGTCTTGTGATAGTTAGTACAGTTAGTTTACTATTTAGCACAAAGTTGTTTTGCTGCATTGTGCCTTTGTAGggcagagctgtttccccttacgttcatctttatgctaagctaagctaacctgcgACTGGCTATACTGTATCTTCCTATTTAATGGGTGTATATATCTGTAAGTGGTATTGATCTAATTCTCACTCAACTCATGACAAGAAAGTAAATAAGAAACTATTCTTTTTATACTATTCCTTTACTGGTAATATCTGAAATGCATTAGCTTACTTCAGCTAGGCTATATATATACCATAATTGCTTTTACTTGACAGAAATGAACTGTGAATGGTACAGTACTCATTGACTCTGAACTATGAACACAGCACACCACATCTCAAGCCAATGCTATTGCCTTAAGTGCATGCTCCGTCCCGGGAGAACCCCTGTCATAGTATCTTTGTATTGACTGGCCTTTCAGACGAGTCTCCGAGGAGGCCTGGACCTCACACTGCTCTCCCGAAGCGGGGCATGGGCCCCCTGCTAAGATGCACAGTGCACGACTACTCAAGCATTTTAGAGCCGGTGATGAATTATTGAGAAAATGGATGAGTCAATCTAAATCGCGCTTGCGCTGGATGTCTCAtccttgtgtatttttttttttttaaatcttgccTATCAAGAAATAAATGCCTGAAATCCAACTGAA

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0007155 cell adhesion biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K06275 PARV; parvin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639987.1 lncRNA downstream 24610 22577017 ~ 22682276 (-) True LOC120563633
TU117635 lncRNA downstream 316670 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 339908 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 351690 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 600631 22105880 ~ 22106255 (-) True G87254
TU117745 lncRNA upstream 40937 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA upstream 40937 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA upstream 114357 22834605 ~ 22837835 (-) True G87400
TU117838 lncRNA upstream 428871 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 478324 23198572 ~ 23217138 (-) False LOC120563856
XM_039807948.1 mRNA downstream 590 22693711 ~ 22706296 (-) False parvg
XM_039807946.1 mRNA downstream 605 22693711 ~ 22706281 (-) False parvg
XM_039807955.1 mRNA downstream 690 22691048 ~ 22706196 (-) False parvg
XM_039807957.1 mRNA upstream 6237 22726485 ~ 22735827 (-) False hdac10
XM_039807956.1 mRNA upstream 6237 22726485 ~ 22735816 (-) False hdac10
XM_039807958.1 mRNA upstream 6237 22726485 ~ 22735104 (-) True hdac10
XM_039807959.1 mRNA upstream 6237 22726485 ~ 22733691 (-) False hdac10
XM_039807603.1 mRNA upstream 16127 22736375 ~ 22739778 (-) True aplnr2
XR_005639990.1 other downstream 690 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 690 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 967558 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 967558 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 993332 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 774082 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1018734 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1184854 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 1188921 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 1188921 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile