RNA id: XM_039808101.1


Basic Information

Item Value
RNA id XM_039808101.1
length 2097
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120563727
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13147847 ~ 13152704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGACAATGGGGTCAAACCAAACCAACGACACACCGTAGCTAGCTAGTTGGTTAGTCCTCAacacaactagctagctagcgttaactTACTTCGCGTCTGGGCATTTCTTTATGTTTCACTGTGAAAGCAAGCACTTTAACCATGGACTGAGCTGACGTTACAATAACGACTTTCTTTCACCAAGACCAGCCGCTTGTAGTCATGTTTTAGCCGGCTATCTAGCTATTTATCTTGCTAACTAACACTAACGTCAACTGTTAGCTCGGGTGCTAACTGCTGTCATGTTCAACGTCAGCACAGAGAAGACTGAACGTTAAACGTTGCTCAACTTTcgtaacacaaaacaactaaaagcCACTACTTCGCTGCTAGAAAATAACCATTTTATGAGGGACTCAACTGAAGCTGCAACACTGCTGCTCCTAAAATGAGGAGACTGACCAAGAAGAAGGCTCTGACTCTGGTGAAGGAGTTAGACGCGTTTCCAAAAGTTCCCGAGAGCTATGTGGAGTCCACAGCCAGCGGTGGGACAGTGTCTCTGATAGCATTCACTCTCATGGCTGTCCTCGCCTTCCTGGAGTTCTTTGTGTACAGAGACACATGGATGAAGTATGAGTATGAGGTGGACAAAGACTTCAGCAGTAAGCTGAGGATAAATGTTGACATTACAGTGGCCATGAGATGCCAATATATAGGTGCAGATGTCCTGGATCTGGCAGAGAACATGGTTGCTTCTGATGGCTTAAAATATGAACCAGTCAACTTTGAGCTCTCCCCAGAGAGAAGATTATGGCACATGACACTTCTGCACATCCAGGAGCGTCTGAGAGTGGAGCACGCTCTCCAGGACGTACTTTTCAAGGCTGCAATGAAAGGAGCTCCTCCTGCTGAGCCTCAAAGTGAGGGCAGTCCCACGACCCTTAATGCCTGCAGGATACATGGACACCTGTATGTCAACAAGGTGGCAGGAAATTTCCACGTTACCGTTGGCAAGTCCATCCCTCATCCAAGAGGCCATGCTCATCTAGCTGCACTTGTCAGCCATGACACTTATAATTTCTCTCACCGGATTGACCATCTGTCCTTTGGAGAAGTGGTTCCTGGGATTATTAGCCCTCTAGACGGCACAGAGAAAGTCTCCGCTGAATCTAACCACATGTTTCAGTACTTTATCACCATTGTGCCCACCAAACTGAACACCTACAAGGTCTCTGCAGAAACACACCAGTACTCTGTCACTGAGCGGGAACGAGTGATAAACCATGCTGCAGGCAGTCATGGAGTCTCAGGGATCTTTATGAAATACGATATAAACTCACTAATGGTCAAAGTCACCGAGCAGCACATGCCTCTCTGGCAGTTTCTTGTCAGACTCTGTGGCATCATTGGAGGCATTTTCTCTACAACAGGCATGCTCCATGGTGTGATAGGATTCTTGGTTGATGTTATTTGCTGCCGTTTCCAAATGGGAATCTACAAACCTCTTAAGgAGGTTCCTCTGAATGAGCAGCCAAACAGTGACCCCTCGATTCCTCCAGAAAATGACGCTCAATAATGAGCTCAGCTGCAGCCGACTGTCAGCTCACCATCTCTGCCTAACCCACTAGACAGCAACGAGACGCCGGGAACATGTTTACAAGTTGTTTTATTATGGAATACCTGCTTTGTTCAGAAGTGTGTAAATAtttgtatcatttttttttgttaaattttaTTGGGTGGGTGTAGGATTTCTCCACCTGTGAAAGATCATAATCAATACCTCCAGTAACCATCTGTCACTTTCACTGGAAagccacacaggtgttttcacttagtTTGACTGTTCTCAGGGTTGTGTGGTCGTGTGCAAGCCTGATTGACAGATACAACATGTcttaacagatgaatgtgattCTGAGTTTTTTTCATGTAGTTTGGTGACCTCAGAAAACTCCCAGCATATCTCTGCTCAACGTCGAGCTGAAAAGAGGCCTAATCAGCTACAACAAACAAAAgacctgtgtgggtgtgcaggGGTTTTAAATTGTTCCACAAATGTGCCTGTGTGCAAATATGAGGCTGATTTGTTAAATAAAATCCACTTTCAACTTGA

Function

GO: NA

KEGG:

id description
K20366 ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113600 lncRNA downstream 101818 12977962 ~ 13046029 (-) True G84378
TU113607 lncRNA downstream 107401 12991027 ~ 13040446 (-) True G84384
TU113597 lncRNA downstream 163787 12972389 ~ 12984060 (-) True G84376
TU113591 lncRNA downstream 198924 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 199238 12948274 ~ 12948609 (-) True G84369
TU113690 lncRNA upstream 40565 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 48239 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 82469 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 83947 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 94124 13246828 ~ 13249798 (-) False prr5a
XM_039809178.1 mRNA downstream 121479 13016565 ~ 13026368 (-) True LOC120564327
XM_039807480.1 mRNA downstream 132872 13002120 ~ 13014975 (-) True LOC120563354
XM_039807481.1 mRNA downstream 132872 13003698 ~ 13014975 (-) False LOC120563354
XM_039807482.1 mRNA downstream 134344 13002120 ~ 13013503 (-) False LOC120563354
XM_039807483.1 mRNA downstream 134344 13003698 ~ 13013503 (-) False LOC120563354
XM_039809918.1 mRNA upstream 2707 13155411 ~ 13158096 (-) True kxd1
XM_039809640.1 mRNA upstream 6609 13159313 ~ 13166108 (-) True sinhcaf
XM_039809220.1 mRNA upstream 14614 13167318 ~ 13187582 (-) True LOC120564344
XM_039809829.1 mRNA upstream 35773 13188477 ~ 13192744 (-) True armc10
XM_039808543.1 mRNA upstream 51972 13204676 ~ 13209541 (-) False LOC120563974
TU113260 other downstream 1003301 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1259449 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2485169 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2715703 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2967850 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 77913 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 421127 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 878400 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1070546 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1349256 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile