RNA id: XM_039808125.1


Basic Information

Item Value
RNA id XM_039808125.1
length 1627
RNA type mRNA
GC content 0.48
exon number 10
gene id neil1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17691423 ~ 17695346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCAGTTGaaattgatcattgtttacaataactaaaaaaaaacacgacaGAAGCATCCACTTAGATGAGAAACATGAGAAATACCATGTCAATGGAAATACCTGATGGTAAATAAAGAGCGTGGAAAGCATCGTGGTCTCGCGACATTTTCGGATTAAAGAATGGCCCACCGTGACGTGACAACATATTTGGTAACAAGCATGTTATGAAAGCCTTTTGGTGAGAGTAGACGATCCCGACAAACTCCGCAGGTTATgtgactgtagtttgagtctgTTTAAAGCATAGACAAGTTTATCAACGGCGTGGTCTATTTCCTGGTTTGGgttcacacacaaaatgcccGAGGGACCAGAGCTCCACCTGGCCAGCCTTTACGTCAACAAAATGTGCGCAGGAGTGGTGTTTACTGGACCGGTCAGAAAGTCTGAAGTCAGCAAGAATCCTGATGTGCCCTTCACCTGTGAGGCCTATCGCATCACTGCCGCTTCTAGAGGGAAGGAAGTGAAGCTCACGCTGACGCCCATGAAGAGTGATGATCCAAAAGAGAGAGTGAAGGCAGGACAAGCAGACCAGCCCATGGACATAGTCATTCGCTTTGGGATGTCTGGCTATTTCCGTTTCACCACAGAGGATGAGCTGCCCAAACATGCCCATCTGCGTTTTTATTCCAAAGAGACGCCCTGCAGAGTGCTGAGCTTTGTGGATGCACGTAGGTTTGGCAGCTGGCAGCCCAATGGGACGTGGCAGTCTGACAGAGGGCCCTGCGTAATGTTTGAGTACGAAAGCTTCAGGGAGAAGGTTGTGTCACACCTGTCTGACCGTGCCTTTGACAAGCCCATCTGTGAAGTTCTGCTCAATCAGAAGTACTTCAACGGTATCGGGAACTACCTGAGGGCTGAAATCCTATTCAGGTTGAACATCCCACCCTTTGTTCCCGCCAGGACTGTACTGGAAGGCCTTGAGTCAGAAGATTTAAGTGAAAACAAGAAGCCTGTAAAAAATGAGACCACAGACACAAAGACCTCAGACGGTGCTAAACAGAAATGGGTGAAAGGGGAGACAGGTGACCTGCTCAGACTGTGTCATACAGTTCCTCTAGAGGTGGTGAACTTAGgtGGAAAGGGATACGACCCCCAGAAAACAGACTACTCTGACTTTAAGGCATGGCTGCAGTGTTACTACGTGGATGGAATGAAATCTATCGGGGACCACAATGGCAGAACTATGTGGTTTAAAGGAGATCCCGGCCCCATGGCTCCTAAAGATTCAAAGTCAACCAAGGCAAAAAAGAGAGCAAAGAAAGATGGCCATGATTATTACACTGACAAGAAAAAGGTGGCCAGGAAACGCTCAGAAAGTACATCAAAGAAGAAGGTGGTCAAACAGGAAACTGTGACTAAAACcccaaagaaagaaaagaaagcacGTACGAAGGAAGCCGGAACCAAGAGAAGAAAGGCTGAAAATTCCAGAGAAGTAACTGCACCTCAACATGAAAAGGGATCCACTGCACGTAGGAGGAAGAGCAGCAGTGCAGAGCCAGCTGCAGGTCCACAGAGGCGGAGCGGGAGAGTGACCAGACAGAacagtaaataaaaagaaaagggaggcAGACTGTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115379 lncRNA downstream 34052 17657145 ~ 17657371 (-) True G85660
TU115374 lncRNA downstream 45903 17644429 ~ 17645520 (-) False fbxl22
TU115317 lncRNA downstream 147018 17544155 ~ 17544405 (-) True G85613
TU115304 lncRNA downstream 174256 17515903 ~ 17517167 (-) True G85601
TU115446 lncRNA upstream 46346 17741692 ~ 17742006 (-) True G85711
TU115558 lncRNA upstream 134162 17829508 ~ 17834884 (-) True G85799
TU115562 lncRNA upstream 146754 17842100 ~ 17845786 (-) True G85802
TU115552 lncRNA upstream 166373 17861719 ~ 17865426 (-) False ppcdc
TU115567 lncRNA upstream 193521 17888867 ~ 17892467 (-) True G85806
XM_039808119.1 mRNA downstream 27060 17660281 ~ 17664363 (-) True si:dkeyp-73b11.8
XM_039808188.1 mRNA downstream 35065 17642845 ~ 17656358 (-) True usp3
XM_039807414.1 mRNA downstream 45905 17626011 ~ 17645518 (-) True fbxl22
XM_039807412.1 mRNA downstream 73909 17609100 ~ 17617514 (-) True LOC120563319
XM_039808085.1 mRNA downstream 119217 17566241 ~ 17572206 (-) False LOC120563723
XM_039808128.1 mRNA upstream 118 17695464 ~ 17698567 (-) True commd4
XM_039808152.1 mRNA upstream 28846 17724192 ~ 17741305 (-) True stra6
XM_039808153.1 mRNA upstream 97301 17792647 ~ 17795907 (-) True LOC120563763
XM_039808169.1 mRNA upstream 100689 17796035 ~ 17799387 (-) True stoml1
XM_039808168.1 mRNA upstream 105357 17800703 ~ 17803827 (-) True nr2e3
TU115062 other downstream 883007 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_374 other downstream 926637 16764715 ~ 16764786 (-) True trnah-gug_10
TU114908 other downstream 1250458 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 2147341 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 2207497 15478982 ~ 15483926 (-) True ttc23
unassigned_transcript_375 other upstream 231701 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 335662 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 335662 18031008 ~ 18036276 (-) False G85813
TU115585 other upstream 335662 18031008 ~ 18036276 (-) False G85813
XR_005640154.1 other upstream 335843 18031189 ~ 18031256 (-) True LOC120564816

Expression Profile