RNA id: XM_039808170.1


Basic Information

Item Value
RNA id XM_039808170.1
length 5570
RNA type mRNA
GC content 0.46
exon number 3
gene id c8h15orf39
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17846230 ~ 17856728 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAAGTGACAAACGGGAAAACGTGTAGAAAACAAGCCGTGGATAGAGAGAGGGCGTGACTCCGCCTATTGATCAAACACCATCCTCCTcccttttgtcttttcttcaGTTTGTTAACTTCTCCAAAAGCCGCGTGGACTTCGGGCGAGCCGCTCAAACCTTTTGGCAGGCCTTCATTTCATTTCGTGGGATTTTGGCGCATCCGGACTGACCCGGTCCACGAACAAGCAGAGactttcttttatcttttctCAGAAGTTGGGTTTCATGGAGTCTTTGTGGAAATCATTTATTGTCAACACAGCAACGAGGTCTGGAGCCATATCATTGCACCATCATAACAAAGTTACTACACGATGAGCAGCCAGTCGATGCACAACGTCGTTGACCCAGTGTTTCAAAGCAAGATGCCATTATTCGACGGGACCATAGCGTCAAAACCACAAAACATGTCTGGTTTCCTGGGTAAGCGGATACTGCAGTACAACGGGGCTTACTTCACTTATGATCCCAGAGGAAAGGACGGAGCAGGATTCACTCCTCCTTGGAGCAACTCAAAGACTTCTCTGCTGGATGGTAGAAGTCCTGTAAGTCACCTCTCTGGCATGGAGGGACAAAACCACATAATTTACAGGCAAGACAGCAATTCTTCAGAGGAAGGCCATTCTCATTCTTCCTCTCTGCATCGTGCCCCTGGGATCAACAGTCCCACAGAGGCCGTGCCAGTGGCTGttagaaaacaaaaaactggAGGTGAGAACTCCTCTCCCACATCTGAAAGCTCTGTTTACTTAGCCATTCCTAAGCCAATTTATATGCATAACCCCTGCTGTAATGAACTGGGTTGTGTGATGGGACAACGATACAGCGTGGAACATGGCTCTCCCAGGATACCGAACACTGTATATGAGCATGATTGGATGCACACTGATGCTAACTACACTGAAAGACCGCCCATCCAGAGGAAAGCACAAGACACGCTGCTTCAACAGAGAGGTTTACAGCTTGATCCCAGTGCAGAGCCATTAAAGaggactgtagagacatgcagCCCAGGTAAAGCAAGGACTTTTCCTGCTACGATTGACCCAAACTATAGCAGTTACCCCTGCACCCCGACTCACACACTGTTTGGTTCTCTAAGTGAGCAGAGCCAGCGTTTACAGACTTCCCCCAGAGGCTACACTAGCTTATACCCCCCCCATCCCACATATGGGCATATGACCTCAGAGGTTTATCAGGAACATTCTCCCATGTCCAAATATGGCCAGCTAACACAGCACCCAATGTTTTACTACTCCCACGCAAATGTGGAGGTAGAAAACAGGACACAGTTTAAGCGAAGAGAAGATGTGCCTGTTATTCTCAAACACACAATCTCAAACCCCCGGGAGCATTACATAGTGCCTCAGTCGCTTCATGATGAAAGTCCTTTGCCTAGCACTGAAACATTGCCAAGTCATGTCTTGATGCGGGGTCTTGACTATCAGTGTTATGCAGTTCCCAGATTTCATTTAACTGCAAACCAACTCcaagcccccctaaaaaggcaACATGCGTCGCCTAGCTTGCACTCTAATCGCATAAATGTTTCCCCATCCAGACAATACATGGAGCACCCCATGGTCTCTGCAACCAACCTGCATAAGGACAAACCCAATGACAGCCTGCATGTTCAGCAATCACCTACCAACTCACCATTCCTCAGTTTGGACCAATCCAGTCCTACCAGGCATGTAAGCCAACCTGGCGTCTCACCATCCAGCATACAAATTAACAGATTTTTCCCCCCATTCACCAGCCTGCACATAGACCGGCCTGTCTTTCCACCAACTGGTTTGAACATGGACAGAATCCTGGACTATTCCTCCTGTGAAGCCCAGGTTACATGCCCGAAACAGCCAAAAAGCCTTCCTGTTTCCCCAGCGGCATGGCCGCCCCGGTCACCGCATCACAGTTCACATCGAATTCACGCAGCTGTACCTAAAAGCGCAAATGTCCGAAAAATTATTTATTCCCCTGCTCTTGCACCAGGAAACAAACACAATAGCCCTGTGTCCAGTTCAGGCACTTCTGTTCTTAAAAGGTGCATAAAAAGAAGTATTTCTCACTCATCTTCACCTATCAATATAAAAGAAGAGCATAGGGATTTATGTGAAGTGGAACTCAATAAGAAACGACACAGGGTGGAAATGGAGAATGCACAAGTAGGAAATAAAACCGAATCTCCTCCTATGCCAGTTATTGACAATGTTTTCAGTCTGGCACCTTACCAAGCATACCTGCAGGCCCCTGGAGTGTTATTTTCAGGCAGAGTACGTCAGAGAAACATCCAGTCGTCTGAGCACTGTGAAGTCAAAACCAAGCCAGACATCAGAGCGAAAAGGCCAGATGGAGATGAACGGCAGTCTGTTGTCTCTCTGGTTTCCAAAAAAATCTGTGCAGATACTCCAACAGAGAAACCTGTTGTAGAAATCGTTGAACCTAAAAATATTAAAGCGGAAAAAGTAGATCCATCAGACACGGACAACTCCGTAGAGAGTCCTGTTAGTCAAAGGGACAGCAGCAAAGTAACAATCAAAAAAGAGCCTGAAGAGACGATTTCATCCAACATTGGGCCCATGTTAGTGATAAAGAAATGTGAACCTGATGAACTTGAAAGTAAACCCTCTTTAGCAGATGAAAATGAGACTTCACATGAGTCCAAACCTGGTGAGGTGACTGCACCGATGGACTCATCTTCTCAGAGAGATACGTGCACACTCACCCTGCAACCCAAATCCATTAATCCACCTCAGCCACCTGAGAGGAAACTAAATTTCAGAAACATTCCTCCCCAGTGTCTGAAACTTTCCACCTACAATCTAATTCTCCATGATACGAAACCTTCTTGCCCTGCTCCACCCCCAGAGATGCCACCTGCACAGCTGATAACTGAATTCATACCTAAACAAGAACCCCAAATGCCAGTCCGCAAGCACTTCTTTGAGTTGCACCATTCCCTCTGCAAGCAAGTATCCAACCATGTGTTGGCTTCTTCAAAGCAGGAGCTCAGAACCTGGTTGTCTCAGTTGGGACTGATTGAACCAGCAACTCCTTCAGCCAAAGTCCAGAAAGTGTCCTGTTTGTTGGGGGTAAATGCCAGAGAGGTGTGGCTCAATGAAGAGATGAAGTCAGCGCTCCATAAGGTCCTGGAGAGGTTGAGAGAGTACACCGCCCAGGAACGCTGTCCTTTTCCACACGTCATGCGCACGGGGGCAGTGTTCCTCCCCATGCTGGTGGTGAAGGAGCTGCTGTTTCCGATGGTCCAGGGCAGCTTCATCGACCAGATCCTGCAGGAGCACAGAGTGGAGCTGCGGCCCACCACGCTCTCGGAAGAAAAGATCCTCATTCAGCTTCATAAACGAGCCTGTTCCTCCAGGCTCAGGAGACTGATGTCCCTCAAACACCTGCCTGACATCTACCCTGATGTGGTCAACCTTTTGTATCACGCCTGTGTCTGCAAACATCTGGGATTAGATTTGGATGATCCTGCTGACAGAGACAAAGATGACTGTTGTGAGGAGACGATCAGCTGCTGGACTCCTGTATTTTCAGACATCACCGCCTCACCCTCAGAGTCACACCAACAGAGACATCCGGAGAACCAGGGAACAAAATCACATTTGAACAAGAATAGAACAAAAAGCAGGGTAAAGCACCGTTCGAGGCATGTGTTTCTGGACAATGGTTTGTCAGATGAGGCAGATGACACAGAGAAGAGAGTAAGTGGAGGCGTGCTGAATGCATTTAGTGAGAAAAACTGGAGTGGCCATCAATCTGAAGGAACTGAGAATGGAGAAAGTGACTGTATCGTTGCAGAGCAGCATTCTACACTCATTCAACTTAGCACAACTTCTGAAAATTCATGGATGTGTCCTTTAACCGTGGACAAGCTTACTCCATCTCCGAGTGACACCGAAACGGAGGAAGAATACTCCAGTCTGCAGCCCGTTGGAGCCAAGTCTCCGGTTGGATCCAAGAATTGTTCAGGTGTGATTCTCAAACTGAGGAGGATGTTTAGCAAAGGTCTAAACCGAAAAAAGGCCTGCTACCAAGCGATCTCAGACTCCGGGACATTTGCTGATCCTTCCCTTTCACAGACGGATGGCGGGGAGGGAGAAGTGAACAGCGGGAGGGACCTTCACAGGAGGACGCCCAAAGTAACCCACAGGTGGCAGAGAACAGGAAGCTTCTCTCACGCCTTAAGACCCCTTAGCAGCTCttctaaaagaaaacacagatcaCTCTTAAAGATCAAATACTGCCCCTACTTGTCTGCCTGCCACAGCGCTGAACACAGGAGACGATGGGTCCTGCGTTCAGCTGTCCAGAGGGCTCGGAGGGCCATGAGGTTCTACTACCCAGACCTGGTGGGAAAGAGGATTCGCCATCTGTACGAAGAAGATGACAAATCAGAAGTGTGGTACAGAGGGGAAGTGATACGTATCCATGAGGCCCACGCTAATCCTCTAAAGACTATATTTGAGGTCAGGTATGACAGCGAGCCAGATTGGAAGTACTACCTAGAGCTACTGATAGACTATAAAAACGGCTGGCTCAAAATTGAAGACTAGTTTCTCCACACAAATGTCTAGGTGCCAGTTGTGCTTTTGGTCATGTCACAGAGTGCAATCAGTTTTAAATCTGTTCCCTTTACTGTCCATTTTTGATGGCCAACAACAAGCGGATGAGCCCTAAATATTTGTTTGCCATCCTCAGGAATGAAGTTGGACTGGATTATTTTGTTATGAGGTCAGCTAAACATTCTTTGTCACTTGCGACCTACTAGGTGCATTCTTTGACTATAGCCATTGTGCAAAATCCTGTagttttttaagtattttaagcGCTTATCATCTTTGACACATCTATCAATGGCTTTTCTGGTTTAAACACAAAAAGGATTATGGTTATTTGACAGAAGTGCTACAACCTTGCAAAAtggatgcaaaaaaaaacaaacaatccaTGTATCCTTTTAGGGATTTTAATTGCAAGCAACTATAAAGTCTAGTATTTGTCATCCACTTTTCTGgttaaatttagttttttttaatttttttattctgaGTGAAGTTAggttttctattattttgccaGTAAAAAATACTAAACCAGCAAATGACATGcagacatatataaaagggtttACTGTCAAACAGTGCCAGCCACATGTATATAGGTTTACAGTAATAGTGCCAGTCGGGTGCATTATTATAGCAGTGATTTTGACCCTGATTGTGGttggtgttttgttgtgtgtatctGAAGCTGGACAGGCATTAATGTAGTTCTGGACTGAAGCTGGACAGGCATTAATGTAGTTCTGGACTGAAGCTGGACAGGCATTAATGTAGTTCTGTACTAAGCTGCTCATAGTCTTTAATGACACCCGGGCTGAGATGCCCCCGTGCCATAGCGTTTGAATCACTGTGAACCTTAAgacttattttatatatttttccttGCAGATTGAATTGTTTAAACATTATTCTCATTGtcttaaataaatgtttgtaataatcaaa

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115562 lncRNA downstream 444 17842100 ~ 17845786 (-) True G85802
TU115558 lncRNA downstream 11346 17829508 ~ 17834884 (-) True G85799
TU115446 lncRNA downstream 104224 17741692 ~ 17742006 (-) True G85711
TU115379 lncRNA downstream 188859 17657145 ~ 17657371 (-) True G85660
TU115374 lncRNA downstream 200710 17644429 ~ 17645520 (-) False fbxl22
TU115552 lncRNA upstream 4991 17861719 ~ 17865426 (-) False ppcdc
TU115567 lncRNA upstream 32139 17888867 ~ 17892467 (-) True G85806
TU115568 lncRNA upstream 35029 17891757 ~ 17892467 (-) False G85806
TU115571 lncRNA upstream 37179 17893907 ~ 17956629 (-) False dennd4a
TU115589 lncRNA upstream 159379 18016107 ~ 18016774 (-) True G85815
XM_039808173.1 mRNA downstream 27295 17813374 ~ 17818935 (-) False hexa
XM_039808172.1 mRNA downstream 27298 17811551 ~ 17818932 (-) True hexa
XM_039808171.1 mRNA downstream 27303 17812463 ~ 17818927 (-) False hexa
XM_039808168.1 mRNA downstream 42403 17800703 ~ 17803827 (-) True nr2e3
XM_039808169.1 mRNA downstream 46843 17796035 ~ 17799387 (-) True stoml1
XM_039809890.1 mRNA upstream 4985 17861713 ~ 17877065 (-) True ppcdc
XM_039809888.1 mRNA upstream 24680 17881408 ~ 17886210 (-) True ints14
XM_039809887.1 mRNA upstream 25185 17881913 ~ 17886727 (-) False ints14
XM_039809884.1 mRNA upstream 37125 17893853 ~ 17921248 (-) True dennd4a
XM_039809895.1 mRNA upstream 75477 17932205 ~ 18006530 (-) False megf11
TU115062 other downstream 1037814 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_374 other downstream 1081444 16764715 ~ 16764786 (-) True trnah-gug_10
TU114908 other downstream 1405265 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 2302148 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 2362304 15478982 ~ 15483926 (-) True ttc23
unassigned_transcript_375 other upstream 70319 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 174280 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 174280 18031008 ~ 18036276 (-) False G85813
TU115585 other upstream 174280 18031008 ~ 18036276 (-) False G85813
XR_005640154.1 other upstream 174461 18031189 ~ 18031256 (-) True LOC120564816

Expression Profile