RNA id: XM_039808184.1


Basic Information

Item Value
RNA id XM_039808184.1
length 9467
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120563776
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14617291 ~ 14632303 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGCTCTCTATGCCCTGTGCCCTCCATCCCTCGGAGATCAGACAGACGCTGACAGGGGATATCCGAGGAGCTTTGAGCGAGGATGGGGACACAGATCTGCTGTTGATGAAGGAAGTCTGATGTAGATGGTGAGCCAGAGGAGAGCCCAGGgagcagcaccagcagcagtGGGGCTGTAGATGCCCTCTCCACAGCTCCATCCCCAGCCCCCCCCCAGGCCTCTGCCGGAGAGCCAGGACAGAGAGGAGACAGCTCTTGCTCTGACTCCGACAGTCCTGTAGATACCAGCTCctgcgaggaggaggaggaggaggaggaagaggaggaggaggaggaggaagacgcAACTATGTTTTCCTCTAAATTCCTTAGCGGGGCCAACCCCCTCAATGCTGTGTCCTCTGCTGTGAATAAGTTTGGTTTATTTGGAGATGATGGGGAGGGGGACAAGAATAAGAAAGCCCCTTCCCAGCAGGGGACACCATCTGGAGGACAGCAGCCAGGAGTAGGTCCTGACAAAGGCCCTCAACAACCGCATGGACCCCAAAAATCAGGCCAGGGCCCACCTATGCAAAAGGGCCAGCCTCTTCCTAAACAAGGATCACCACAGCTGCATGGGAATGGACAGGCTGGTTCCCCAAACAAGCCCAGTGGGCAACAAGCTGCTCCAAAGGAAGGGACACAGCCTGAAGACCAGCTTAAAGGACAGCCACAAAAAAATCAACCTAAGGACCCACCACAGCAAGGTTCACCTAAGCCTGGAGCTCAACAACATATTGTGACTAAGAGTGGAGCTCAACCAGGATCTCCAAAGGCATCAACACAACAGGTTCCACCTAAGACAGGGATGCAACAAGGGCCTGCTAAGACTGGtgcacagcaacaacaacctgcaAAGACTGGGATGCAAGAGTCCACAAAGGTTGGGTCACAAAAAACTGGCTCACAGCAAGGGTCACCGAAAGTAGGACAAAAACAGGGCTCACCTAAACTTTCACAGCAAGATGGTTACCCTAAAGTGGCACAGCAACAACAGGGCTCATCTAAGGCGGGACAACAACAGCAAGGCTTCAGGACTACACCCCAGCAGCAGTCCTCTGATAAACCTGGGCCTCAGCAACAAGGCCCTAAGGGACCTGGTACACCTGGCATGTCCCGGGCAGCGTCTTCATCACCGGGACCAACCAAAGTCGGATCTCAGTCAAAAGCATTAGCTAAGTCCCTTTGCCCAGTGTGTAAGACAACAGAGCTTAATATGCACACAAAGGAACCACCTAATCATAAAACCTGTACACAGTGTAAAACTGAAGTGTGCAGCATGTGTGGCTTCAGCCCTCCAGACTCTGATggACGTGAGTGGCTCTGTCTTACCTGTCAGATACAGAGAGCTCAAGGAGCTTCTGAACCACCAGGACCTTCCATGAAAAAGCCAACACCCAACAAAGTTTCTGCTGCTCAAAACCAGACACTATCTCCTGCTGCACCCGTCAAAAAAGAGATGTTATCACCAGGTTCACCTCAGAAATTGCAGTCTACATCAGAAAAAGTGCCATCCAAGGGTGAAGCTGCCAAAGTACCAGAAAGTCAAAAACAGGCCAGCCCAGCTTCTGTTAAGAAAATGACTCCTGAGACCCAGAGAACATCAGGGTCTCAAAAACCAGACCAGACTAGTCAAACTGGACGCAAGCAAAGCAGTGCCCAGCAGGAGTCAGGAGGTTTATTTGGCTTTGGCGGTTCTAAAACTGAAGCTGCAAAGCCTGGAGGGATGTTTGGGTTTGGTTCCTCCATTTTTAGTTCTGCATCTACCTTGATAGCCTCAGCTGTTCAGGATGAACCTAAAATCACACCACCAGTTTCTCCCAAGATGCAGTCTACAAAGGAGACCAAACCAGCTACTGTCCAAAAGTCAGTGCAAGACAAGAAACAAGAGCAACCCCAGCAAGCAAAGGCTCATCCAGTACAGGTCACAGTGGAAAAAGCTTCACCAGAGACTGAAAAGGCAGAAACAGCAGCTGCCTCCCACAATGTTCCTAAAGGAGGTCAATCCACTTGTCCACTCTGTAAGGTGGTGCTCAATATGGGCTCGAAGGATCCTCCCAACTACAATACCTGCACTGGATGCAAAAGCACTGTCTGCAACCAATGTGGATTTATCCCAATGCCAAATGTCAGTAAGGGAAAGGAGTGGCTTTGTCTAAACTGCCAGGTGAAACGAGCTGCTGGCGAAATTGAACCCCAAAAAGACACATCTTTGGTCAAttcctcatttaaaaaaactactcCAGCACAGCCTGCACTACAAAAGACTTCTGCACCAGGCTCTCCTCAGAGAAAACTATCCACACCCACAGCACAACCAGCCAAGGCTGAAACTGCTAAAGGACCAGACAGTTTAAAACAGGTCAGCCCAGCTCCTAGTCAGAAAACACCTCAGGACAGCCAGAAGACAGGTCCTCAGATACAACCAGACCAGACAAGCCAAGGTGCACATAAGCAGGGAAATGCTACTGCAGCTACACAGCAAGAGTCAGGAGGGTTCTTTGGTTTTGGTGGTCCTAAAAGTCAGCCCGACGCTGCAAAGCCAGCAGTGACTGGGAAGATGTTTGGTTTTGGTTCCTCCATCTTTAGTTCTGCATCTACTTTGATAACCTCAGCTGTTCAAGATGAGCCCAAATCTACACCGCCACTTTCTCCCAAAATGCCTCCTCCAAAGGACTCTAATTCCCCAACTGTCAAGAAACCAGAACAGGAGAAGAAACCAGAACAAACCCAGCAGGCCAAGGGTCCTCCATCAGTACAGCAGAAAGCGGACAAAGAGCCGCCAAAGAAAGCATCTGCTTCCCCAGTTGTTTCCAAAGCAGGCCAGTCTACCTGTCCTCTCTGTAAACTGGAACTCAATGTGGGCTCTAAAGATCCTCCCAACTACAACACCTGTACAGAGTGCAAAAACACTGTCTGCAACCAATGTGGATTTAATCCCATATCAAATGTTAAAGAGGTGAAGGAGTGGTTATGTCTCAACTGCCAGATGCAGAGAGCACTAGGAGCATCTGAGCCTCCAGGAACTCCAATGATAAAACTACAGGCATCACCAAATAAAGTCCCTGTACCTGCCAGTGCCCAAAATAAGGAAACTCCCTCACTAGATAAACCTCAAAAGAAAGACATTCAAACACCAGCAGAATCTAAAATAAAGGAGACATCTGCACCAGGTTCCAAACCACCAACACCAGCAGAGCAGCCAGCAAAGCAGCCAGCAAAAGCTGAAGTCTTGAAAGGACCAGAACGTCAGAAACAGGTCACCCCAGCTCCTGGTCATAAAACTCCACAGGAGGGCCAAAAGACAGGTCCTCAGAAACCTCAAGACCAGACAAGTCAAACTGGACGTAGGCAGAGTAATACTACCTCAACTACACAAGAGGAATCTGGCGGTTTCTTTGGATTTGGTGGTTCTAAACCTCAACCTGATGCTGCAAACCCTGCTGAATCACTGGGTGGAAAAATGTTTGGCTTTGGTTCATCCCTCTTCAGTTCTGCATCCACTTTGATAAATACACCTGTCCAAGACGATTCTAAAACAACACCACCGGTTTCTCCCAAGATGTCTGCAGTGAAGGCAACCAAATCACCTCTTGCTCAGAAACAAGAGCAAGAGAAGAAGCTTGAGTCCAAGACCTCTCCATCACCacaagtcagacagacagagcctAGAAAGGATGGAGCTGCTTCCCCAGCTGTTCGCACAGCAGGCCAATCTACCTGTCCACTCTGTAAGGTGGAACTCAACTTTGGCTCCAAGGAACCTCCCAACTATAACAACTGCACTGGATGCAAAAACACTGTCTGTAACCAATGTGGATTTAATCCAATGCCAAATGTATCAGAGGTAAATGAATGGTTATGCCTGAACTGCCAGATGCAGAGAGCTCTTAGTGCATCTGAACTCACAGGACCTCAAAAGATGGAGTTATTGAAATCGGATGCACCTTCAATGATGGAGACTCGAGTGCCTGATACTTTTCAAAAGAAGGGGAGTCCCACACTAGGTTCTCCTCAGAAGACACAGGCTGCAGCAGTAACAAAAGCAACTAAGGCTGCTAAAGAACCAGaacctcacacacaggcaagcCCAACTCCTGGTCAGAAAACTCCTCTCGATATCCGGGGGGCATCAGGTTCTCAGAAACCAACCTACCAGGCAAGTCAACCTGAACTAAAACAGAGTAAGGTCACCCCAGATACAAAACAGGAATCACAACACCTATTTGGCTTGAGTGGTCCTAAAACAGGGCCTGATGTTTTGAAAACAACAGAGTCTGTGACTGGGAAGATGTTTGGCTTTGGTTCCTCCATTTTCAGCTCAGCATCAACTTTGATATCATCTGCTCAGGACGAATCACGTACTACTCCACCAGGCTCTCGTAAGATGTCTTCACCAGCACAAGTCTCTCCCAAGATGTCTGCTGTGCCCAAGACTTCTCCAAAAAGTACACCAACAGTTTCTCCGAAAATGTCGCCAGCAAGAGATCCCAAAATTCTTGTTCAGAAaccagagcaggagaagaagcCAGAACAATCCCACCAAAGCAAAGAGGACAAAGCTCCTTTACAGCTTCCAAAAGCTGCAACAATCTCCCAAATATCTTCTAATGCAAGCCAGGCCACCTGCCCACTGTGTAAGGCTGAGCTTAACATCGGCTCCAAGGACCTTCCAAACTACAACAACTGCACTGAGTGCAATGCAACTGTCTGTATGCAATGTGGATTTAACCCAATGCCTATAGGAGAGGTAAAAGAGTGGCTATGTCTTAACTGTCAGATGAAAAGAGCAGTTGGAGCATCTGGGCCTCCAGGACCACCCACATTGAAGTCCCAAACATCACCCAGTGAAGTTCCTTCACCTGCTGCAGTCCAGTTGAAGGATTCTTCCAAACCAACTACACCTCAAATGAAGGACAGTCCAGGCCCTACTGTACAAAAGGAGACCTCAGAACCAGTATCACAACAGAGAAAACAGTCTACACCATCAGTGCAGTCAGGCAAATCTGAAGCTCCTAGTGCACCATTAAAACAGGCCAGCCCAGCACCTGATCATAAACCACCACAGGAAAGACAGAAGACAGGTCCACAGAAGCCTCCAGATCAAGCTAGCCAACCTGATGCTGCAAAGCCTGCAAAGCCAGTAACAAATAGGCAAACAGAACGTAAGCTGAGTAATGCCACGGCAGCAACACAGCAACAGTCAGGAGGCTTCCTTGGTATCGGTGGTGGTAAAACTCAACCCAATGTTGCAAAGCCAGCAGAGTCAGCGACAGGAAAAATGTTTGGCTTTGGCTCATCCATCTTCAGTTCTGCATCTACTTTGATAACCTCAGCTGTTCAAGACCAGCCCAAAACTACTCCACCAGTTTCACCCAAGATGTCTCCTGCAAAAGTAATCCAGTCCCCTAGTGCCCAAAAGCTGGAGCAGCAGAAGAAAACAGAGCCATCCCAGCAAACGAAGACACCATCAGGACAGGCCAAATTGGACAAAGCCCCATCAGAGCCTCCAAAGACTGCAGCAGCCTCCCTAGTAGCTGTCAAACCAGGCCAGTCTACCTGTCCACTCTGTAAGGTGGAACTTAATGTGGGTTCCAAGGATCCACCCAACTACAATACCTGCTCTGAATGCAAGAACACTGTCTGTAATCAGTGTGGATTTAACCCTATGCCAAATGAAACAGTGgtGAAGGAGTGGCTGTGTCTCACCTGCCAGATGCAGCGGGCTCTAGGAGCAACACAGCCCCAAGGAGTTGCTTCTGTCCACTCTCAGATACCTGcaaaaccacaaaataaagacaTCATCAGCTCAGCTGAACCTGAAAAGAAAGACTCGCCTCAGAGGAAACCGTCTGTAACAGCACAGCCAGCTACAGCCGAAGCTGCTAAGAAGCCAGAGGGTCAGAAACAACCCAGCCCAGTTCCTTCTCAGAAGAGGCCGCAGGAGCCCCAGAAAACACCAGGTCCTAATAAATCACCAGACCAGATAAGGCAAACTGAACGTAAGCAGAGTAATGCGACAGCAGCAACACAGCGAGAGTCAGGAGGCTTCTTTGGTTTTGGTGGTGGTAAAACTCAGCCCGATGCTGCAAAGCCAGCAGAAGCAGTGACTGGGAAAATGTTTGGCTTTGGCTCTTCCATCTTCAGTTCTGCATCTACTTTGATAACCTCAGCTGTTCAAGACCAGCCCAAAACTACTCCACCAGTTTCACCCAAGATGTCTCCTGCAAAAGTAATCCAGTCCCCGAGTGCCCAGAAGCTGGAGCAGCAGAAGAAAACAGAGCCATCCCAGCAAACGAAGACACCATCAGGACAGGCCAAATTGGACAAAGCCCCATCAGAGCCTCCAAAGGCTGCAGCAGCCTCCCTAGTAGCTGTCAAACCAGGCCAGTCTACCTGTCCACTCTGTAAGGTGGAACTTAATGTGGGTTCCAAGGATCCACCCAACTACAATACCTGCTCTGAATGCAAGAACACTGTCTGTAATCAGTGTGGATTTAACCCTATGCCAAATGAAACAACGgtGAAGGAGTGGCTGTGTCTCACCTGCCAGATGCAGCGGGCTCTAGGAGCAACACAGCCCCAAGGAGTTGCTTCTGTCCACTCTCAGATACCTGcaaaaccacaaaataaagacaTCATCAGCTCAGCTGAACCTGAAAAGAAAGACTCGCCTCAGAGGAAACCGTCTGTAACAGCACAGCCAGCTACAGCCGAAGCTGCTAAGAAGCCAGAGGGTCAGAAACAACCCAGCCCAGTTCCTTCTCAGAAGAGGCCGCAGGAGCCCCAGAAAACACCAGGTCCTAATAAATCACCAGACCAGATAAGGCAAACTGAACGTAAGCAGAGTAATGCGACAGCAGCAACACAGCGAGAGTCAGGAGGCTTCTTTGGTTTTGGTGGTGGTAAAACTCAGCCCGATGCTGCAAAGCCAGCAGAAGCAGTGACTGGGAAAATGTTTGGTTTTGGTTCTTCCATTTTCAGTTCTGCGTCCACTTTGATAACTTCAGCCGTTCAGGACCAACCCAAGACCACTCCACCAGTTTCTCCCAAGATGTCTCCAGCAAAAGAGATCAAATCCCCTGCTTCTCAACAGACGAAGCCAGAACAGCCCCAGCAGACTAAGACACCTCCATTGGTCCAACCTAAAGTGGACAAAGCTCCATCTGAGCCTCACAAGGCTGCAGAGGCCTCCCAAGTCACTGTCAAACCAGGCCAGTCTACCTGTCCACTCTGTAAGGTGGACCTCAACATGGGGTCCAAGGATCCACCTAACTACAATACCTGCACCGAGTGCAAGAACACTGTCTGTAACCAGTGTGGATTTAACCCTATGCCAAATGTGTCAGAGATGAAGGAGTGGTTGTGTCTGACTTGTCAGATGCAAAGAGCTCTCACAGCAGCCGAATCAGTAGTGCCTCCACTGAAGAAACCCCAGGCATCACCCAACAAAGTGCCCCCACCTGTTTTTGCTCCAAAAGACGCCACTGCCAATCAAAGGAAAGACATTATTTCCCCACAAAAAGCTGAAGTGCCAGACAAAAAACAGAATGACAGTCCAATACCAGGTGCACCACAAATGAAAGAAGAATTTAAACCCTCATTTCAATTGGACATTACCCAAACATCAACCACTGCCTCAACACCTGCAAAAGAGGTTTCAACCTCCACTGCACCTCCCATCAAAGAGACAACAGCAGTAGTTTCAGCCCTCAATAAACCACTGCCAGTTCAAGCTCATCCTGTCAACACAGATGTTGAAACTTCTCTCCAGAAGAAAAAGGATAACACTCCACCAAGTTCTCCTGCACCTAAAGAAATAtcagaaaagaaagaggagaaagcTAAAATTGTTCAGAAATCTGCTGATCAACCACTCACATCCTCTGATGAAGTACAGCCCCCAAAAGCCCTAGAGAAAGAATCAAACTCTGTTGAAACATCACTTGCCAAATCTGCTCCTCCAGCAGAACAGCCAACAAATCAAGAATCAGGAGGTTTCTTCAGCTTTGGTAGTCCTAAATCTCAGCGTGCTGCCTCAAAAACAACTGAAGCTGTGACTGGGAAGATGTTAGGATTTGGTTCATCTCTCTTCAGCTCAGCATCCACCATGATAACATCTGCAGTCAAGGAAGAGTCCCGCACAACACCACCCAGTTCCCGCAAAATGTCTGCCCCAGCTCAAGTCTCTGGCAAGATATCATCATCGCAGATTTCTCCAAAGAGTAGCCCCCCAGTTTCTTCAAAGATGACTTCAGCAAAGGAGGTCAAACCGCCTTCTGCTCAGAAACCACATTCGGAAAAGATAACAGACCAACCTCAGCAGGCCAAGGCTCCTCCATTAGAACAGGCCAAAGTGGAGCCATCAGATTCTGCGAAACCAGAAGCCTCTCAAGCTGCTCCCAAAGTTGGCCGGTCTACTTGTCCACTCTGTAAGGCAGAACTTAACATGGGCTCTGAAGATCTTCCCAACTACAACACCTGCTCTGAATGCAAATCCACCGTCTGCAGCAAATGTGGATTTAGTCCTATGTCAAATGTAACAGAGGGGAAGGAATGGCTTTGTCTCAACTGCCAGATGCAGAGAGCACTTGGAGCTTCTGAACCTCTAGGCCTTCCCATGATAAAACCCCAACCTTCACCAAGCAAAGAGGTCCCTGCCACCACACAGAAGAACGAGACCCCAATGTCAACTTCGCAGGAGGACATCCATAAACCAGCCACACTCAAAATTGAGCTTGTTGCAACAATCAAAGAAACTGAATCCCCAGCGCTTAGTGGACAAACAAAGAAAGATACCCCTGCAGATGCTTCATTGCCTGACAAAACTGTTCCATCCACTACCACAAAGACTGATGTTTCACTGGCTTCACAAAAGCCTTCTGGAGAGACACCCAAAGGACAACGTAATATACCCCCACAGCAGTCTGCAAAAGCTATGACTTCTACTGCTATATCTGCTCCTTCAACAGGTCCAGAGGCAGTAAAGCCACCCCCAGAACAGCCTCCAGATGCTGGTACTTCTATTGCTATATCTGCTCCTCCAACAGGTCCAGAGGCAATAAAGCCACCCCCACAACAGCCTCCAGACGCCGTTACTTCTACTGCTATATCTGCTCCTCCAACAGGTCCAGAGGCAATAAAGCCACCCCCACAACAGCCTCCAGACGCTGTTACTTCTACTGCTATATCTGCTCCTCCAACAGGTCCAGAGGCAATAAAGCCACCCCCACGACAGCCTCCAGACGCTGGTACTTCTACTGCTATGTCTGCTCCTCCAACAGGTCCAGAGGCAGGAAAGACACCCATACAACAGCATCCAAAACCTGTGACTTCTACTGTTATATCTGCTCCTCCATCAGGTCCAGAGGCAGGAAAGACACCCATACAACAGCATCCAAaacctCAAAGCCTGCTGAGTCAGTGA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114412 lncRNA downstream 50022 14558458 ~ 14567269 (-) True G84960
TU114175 lncRNA downstream 251893 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 332329 14283896 ~ 14284962 (-) True LOC120564348
TU114161 lncRNA downstream 352305 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 353550 14263416 ~ 14263741 (-) True G84761
XR_005640144.1 lncRNA upstream 175108 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 219417 14851720 ~ 14852023 (-) True G84971
TU114375 lncRNA upstream 321825 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 321825 14954128 ~ 14955407 (-) False G84948
TU114472 lncRNA upstream 425422 15057725 ~ 15057929 (-) True G85007
XM_039808182.1 mRNA downstream 59063 14501896 ~ 14558228 (-) True LOC120563775
XM_039809493.1 mRNA downstream 136505 14463359 ~ 14480786 (-) False LOC120564472
XM_039809492.1 mRNA downstream 136505 14463359 ~ 14480786 (-) True LOC120564472
XM_039809530.1 mRNA downstream 341214 14274305 ~ 14276077 (-) False LOC120564497
XM_039809531.1 mRNA downstream 342398 14273629 ~ 14274893 (-) True LOC120564497
XM_039808787.1 mRNA upstream 10535 14642838 ~ 14667500 (-) False sema3e
XM_039808786.1 mRNA upstream 10535 14642838 ~ 14667499 (-) True sema3e
XM_039808785.1 mRNA upstream 51144 14683447 ~ 14708118 (-) True sema3ab
XM_039809864.1 mRNA upstream 125676 14757979 ~ 14795130 (-) True sema3d
XM_039809865.1 mRNA upstream 125676 14757979 ~ 14795129 (-) False sema3d
TU114408 other downstream 110090 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 380339 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 584076 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 999395 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1386196 13230617 ~ 13231095 (-) True G84530
TU114449 other upstream 334152 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 433736 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 846679 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 882475 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1807071 16439374 ~ 16440965 (-) True G85321

Expression Profile