RNA id: XM_039808197.1


Basic Information

Item Value
RNA id XM_039808197.1
length 4246
RNA type mRNA
GC content 0.42
exon number 3
gene id nr2f2
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15802424 ~ 15811999 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTTGCAGCAGTCGTGTCAAAGTTCACTATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCCGGCTCCTACCAATCGCAAATCACTTCCTAACCTCCGCCTTTTTAACATATTTGATCACTTTGATTCTCTACTCCTTTTTCCTATTATTTTTCAGTGCACGGAGGAGGTTTGTAGGTTGTGatcttagtttttttgttttttgttttagtgcTTTCGCTTTTTTTGGGGAGAGTTGTCTTCATATTCCAGGCTCTCCAAAAACATTGGCTTCAGCTGCGCGCTTGCTGGCGCTACCTCAcaagaagaaaaggaagaagacGCAATTTTTTTACCCAGTTGGTGATTTTCTTCTTCAAGACTTGTGCTGGAACTTGATAGTAGCTGCTACAGTGTGCTCACCAATTGTTTTATGCTGCTACAGGCACGGTCTTACCAACCCTGCTCCATCATTCACTGAATAGTCCATGCTACCTCGGctgattattttaatatttagcCTACATTTCCCATTGATGGGTGTACTGGATGGCTGACTGTAAGCGCCCCTGGACTTGGCCTTTAAGCGCAAGGCAGCGACTCAGCTCGCCATCGCATCAGTTTTGAAAACGTGCTTCGCAACGTCTCCAACAGCAATAAATCGACAGTTATCAGGAGATTCTGAGTGGATTCAACGTAGGCTAGATTTGACATTGTGTGTGTCCGGCTGTTAATCACAGTTTACCGCGTTTCCTTGAGACATTATTCACCGCGACACCAACACGGCAGACAAAAAGTTTCTTTACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCTGACACCCAAGGCACCCTTTCCTCGCAAACCCAAGGAGGACTATCTCTTCCCACCCCTCAACCAGGCCAGTTGAATCTGACAGCCTCTCAGGTCGCCCCTCCGACCCCTCAGACTCCGGTCCAAGGACCCCCGAACAACACACAGTCCACGCCGACGAACCAGACGACGCAGCAGTCGGAGAAACAGCCACAGCACATTGAATGCGTGGTCTGTGGGGATAAATCTAGTGGCAAACACTATGGCCAGTTTACTTGTGAGGGCTGCAAAAGCTTCTTCAAACGGAGCGTACGACGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCAATCGACCAACATCACCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTCGGCATGAGACGGGAAGCCGTGCAAAGGGGACGGGTGCCACCCACACAGCCACACCACGGTCAGTTCGCCTTGACAAATGGAGACCCACTGCACTGTCATTCCTACTTATCCGGATATATCTCTCTTCTGTTGAGAGCGGAGCCCTACCCGACGTCCCGGTATGGCAGTCAGTGCATGCAACCCAACAACATAATGGGCATCGAGAACATTTGTGAACTAGCAGCCAGGATGCTCTTCAGCGCCGTGGAGTGGGCCAGGAATATTCCCTTCTTTCCAGACCTTCAGATCACCGACCAGGTGGCTCTTCTGAGGTTGACGTGGAGTGAGTTATTTGTGCTCAACGCCGCGCAGTGCTCCATGCCCCTGCATGTGGCTCCTCTCCTGGCGGCGGCTGGCCTTCACGCCTCCCCCATGTCTGCGGACAGAGTGGTGGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTCAAAGCTTTGCACGTTGACTCTGCTGAATATAGCTGCTTAAAGGCAATTGTGCTCTTCACCACAGATGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAGGAGAAGTCCCAGTGCGCCCTGGAGGAATATGTCCGGAGCCAGTATCCCAACCAGCCAACACGGTTTGGGAAGTTGTTACTCCGCTTGCCTTCCCTCCGCACAGTCTCTTCCTCGGTCATAGAACAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACTCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCTTACATGTCAATTCAGTAAACCAAGAAGGAGACGAACAAACAAAAGGTGGGGTTGGGGGCTGCGAGACTACAATGATTATAGCTGCTTTTGTGGAAGGAATTAAAAACCAACCGGCTGTTACACGGGGCTGGCTTTCATGAAGAAAGACATTGACGTAAATGACTGTGAATTCCCCCctactccaaaaaaaaaaaaaaattgagacatCCACTGAACTTTCAAAATGGCAGATACAAGCTCCCAGTGTTCATGCAGAACAACCTGCTccgattcattttttttaatgaaagaagaaaatgaggaaaaaaaaggaaaggggatTTTGTTGATCCTTATAAGGAAAATTTAagtattaagtgcatttaaaaatgataatttgggtaaaaagaaaaaaactggaGAAAGGGAAAATAAGAAACGTGAATTTTCATTTCTCAAATGACTTGTCCTGTGTCCATGTATAGCTGTGTTTTGTACTTTCTTTGTTCCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTTCTGTAGTACAGGTGGTGTTATTTTCTAAGACAatgatttattttgaaaaggtgtaaaaaaaataataaaaaaaaaagttctaaaaaGAATTAAAACCACAGCAATAGGAGTATAGGCTAATAATCTATAGGCTTAATGCTGCAAGCGCACTTATATTCTTAGGATGACCAATACCATCTGGGAAAAGGGCGTTTTTGTTCAACTTTATGACCCAGCGGAAACATGTTTTCTCTTTATTAATATGACGTTACACGATCCAGTTtgttttccaaatttttttGCGGAAAAGTCTTCCCCATTTCATCCAGCTTTGAATAGTTGGCATATGTTCCCCAATTGGATACAATGAAATAAATCCTACAAGTTGCCTATCCTGCTGTTACAGAGGTATCTACAGGTTGCTCTTAATGTGTTATATGTGCATTCAAGGGCGTTTGCAGTAGCTCAAACTGCACTAAAAAGCATAACtaaacttgtttaaaaaaaaaaaaaatgggagagGTCAAGGGTCATAAAAGTTTGAAGCCTAGCCAGAGTAGTGTTTAATAGCAGTATTATTAAAGCGTCCCTGAAATGTCAACCTTTATTCACTTCAAGCATTAAGTGCCTGACAAGCATGATGTGATTTCTTATCAAAACGTTGTTAAAGTAGGCCGACAACATTTTGGAGGAACACAATTAGATTTGAAACTTCAGTCGTGTATTTCACTTGAAAAACACTGATTAGAGGCAGTATTCTTGTAAATATAGGTCAATTCATTTCAACGAGTTTTTCCTTTATACAAAGTATATGTGATTAAGAAAAATCTGTGGTTGCCATTTTTTTCTCGGTAATACAACGTCTTCAAAATTGAGTGGCAGACTTAGCTAGTAGCACTgaaatttatgtttttaatgtatatacatattactacaaatgttttctttttcatgtaTATTTAGACTGTGAATGCATGGCCACAGGTCGCTAACCTATTTTACCTttgatatataaatgtaaatgttttctctctcttttttgacTGTATAGATATAATCTGTGCATTCAGTACACTAGCCCTTGtatttaaagaaacaaaaaagaaaagaaacgacGTTCATTATTAGGCTACAGACTTAAACAGGGTGAGCAGGTTTGAGAAAAGGAGTTGATATTTTAACTTTAGTGTTATTGCTCCTTTGGTCTTTGACAGGTGCCGTGGTGTGcgtgaacgtgtgtgtgtgcgcgcgcgtgtgtgagaacgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtatttggaAGCTAGCAATTTTGTCCTTGTTTTGAGGCTTTtcttcaacacacacaaaaacaccatgttgtggTTGAATTAAAAGGGATCACTGATTGAACACTGATCTTTGGCTGTTCGTAGCCACATATGGACCAGAGAATGATACATGATTGTAATTATGAACAGTTTAAACTGACCCacgtttttatataaatatataaaaatatatgacTGCAGGGTATTGATAACGTATAGatactttttttatgattattattattaattgcaAGTGatatatgtgagtgtgtgtgaaagtTTATAGTTGAACACAattcttgtttgtttgtgttagctTATTGTAAACAAGCATTCTGCTGTAAATTTGTTCTTGGtattaaattataatttatgAATTTGAAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114653 lncRNA downstream 258342 15536171 ~ 15544082 (-) False G85133
TU114634 lncRNA downstream 329567 15466582 ~ 15472857 (-) True G85125
TU114626 lncRNA downstream 343511 15455655 ~ 15458913 (-) False G85121
XR_005639953.1 lncRNA upstream 49186 15858841 ~ 16048241 (-) True LOC120563424
XR_005639952.1 lncRNA upstream 159418 15969073 ~ 16048241 (-) False LOC120563424
TU114806 lncRNA upstream 364034 16173689 ~ 16183427 (-) False chd2
TU114802 lncRNA upstream 366960 16176615 ~ 16183427 (-) False chd2
TU114804 lncRNA upstream 366960 16176615 ~ 16183603 (-) False chd2
XM_039808556.1 mRNA downstream 318279 15472934 ~ 15484145 (-) False ttc23
XM_039807895.1 mRNA downstream 338710 15456807 ~ 15463714 (-) False pgpep1l
XM_039807894.1 mRNA downstream 338710 15460800 ~ 15463714 (-) True pgpep1l
XM_039808617.1 mRNA downstream 484579 15310877 ~ 15317845 (-) False cd9a
XM_039808671.1 mRNA upstream 346329 16155984 ~ 16187137 (-) True chd2
XM_039808672.1 mRNA upstream 346329 16155984 ~ 16187114 (-) False chd2
XM_039808673.1 mRNA upstream 346329 16155984 ~ 16183430 (-) False chd2
XM_039808670.1 mRNA upstream 346329 16155984 ~ 16183430 (-) False chd2
XM_039808674.1 mRNA upstream 346329 16155984 ~ 16175088 (-) False chd2
TU114652 other downstream 258342 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 318498 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 729074 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 834977 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 1295223 14501960 ~ 14507201 (-) False LOC120563775
TU114908 other upstream 629719 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 955060 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 998401 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 2117392 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 2221353 18031008 ~ 18036276 (-) True G85813

Expression Profile