RNA id: XM_039808224.1


Basic Information

Item Value
RNA id XM_039808224.1
length 4984
RNA type mRNA
GC content 0.54
exon number 39
gene id abcc8
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26868886 ~ 26938375 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTGGTTTTCGGGAGTCAGGGAAACGCCGCTGAAACACAATGATCTCACGATATAAAGCGAGTCCCGGCTCCACCATGTCCTTGGCGTTCTGTGGGAACGAGAATAACTCGGTGGCCTACAACGTCGATGGAGGGGTTCTAAACAACGGCTGTTTTCTGGATGCGCTAAATGTGGTGCCACATgttttcctcctcttcatcacctTCCCCATTCTCTTCATCGGCTGGGGCAGTCAGAGTTCAAAGGTCCACATCCACCACAGCACCTGGCTTCACTTTCCTGGTCACAACCTGCGCTGGCTCCTCACCTTTGTcctgctcttcatcctcatctGCGAGATTGCAGAGGGCATTTTCTCTGATGGGTTCAGCCAATCCCTCCACCTGCACCTGTACATGCCTGCAGCTTTGGCCTTCATGGCTGGCATCACCTCTATTGTCTACTATCATAACATCGAGACCTCCAACTTCCCCAAACTACTGTTAGCCCTGCTGATCTACTGGGTGCTGGCCTTCATCATGAAGACTATAAAGTTTGCCAAGTACACCGAGCATGGCATCGGCCCCAGGCAGCTACGCTACTGCATCACCGGACTGCTGGTGCTGCTGTATGGACTCCTACTAGCTGTGGAGATCAATGTCATCCTGGGAAGGcgcTACATGTGTTACGCCGAGCCCAAAGAGGTGAAGCCCCCCGAGGACCTCCAGGACCTGGGTGTTCGTTTCCTGCAGCCCTTCGTCAACCTGTTGTCCAAAGCCACCTACTGGTGGATGAACACCTTCATTACCGCCGCTCACAGACGACCCATCGACCTCAAGGTGATCGGCAAACTGCCCATCGCCATGCGTGCCCTCACCAACTACATAAAGCTACGCAAGGCCTTCGAAGACCAAAAGAGGCCTCAGGGCACAGCACCCCAGAGCCCAAAGTTGATCTGGCAGGCCTTGAGGAAAGCATTTGGCAGACCGCTCATTCTCAGCATCACATTCCGCTTCCTGGCTGACTTGCTGGGCTTCGCCGGCCCTCTCTGCATCTCCGGCATCGTCCACAACATCAGCAAGGACAACCGCACCATTCAGCAGCCGATAAGGTTGCTGGGGATCAATTTCATTTCCTCCAAGGAGTTTCTGGAGAATGCTTATGTGCTGACTGTGCTGCTGTTCTTCGCCCTGCTCCTTCAGAGGACCTTCCTCCAGGCCTCCTACTATGTGGCCATTGAAACGGGCATCAACCTGCGTGGGGCCATTCAGACGAAAATCTACAACAAGATCATGCGTCTGTGCACCTCCAACATGTCCATGGGCGAGTTAACTGTTGCTCAGATCTGTAACCTGGTTGCTATAGATACCAACCAGCTCATGTGgttcttcttcctctgtcctAACCTGTGGGCCATGCCAGTACAGATTATTCTGGGGGTGATCCTGCTCTACTACCTCTTGGGAATCAGTGCCTTGATTGGAGCAACCGTCATTGCTGTGTTAGCTCCTGTACAATACTTTGTGGCCACCAAGCTGTCCCAAACACAAAAGAGCACCCTGGAATACTCCAGTGAACGTCTAAAGAAGACCAATGAGCTGCTGCGGGGCATCAAGCTGCTGAAGCTGTACGCCTGGGAACACATCTTCTGTGACAGTGTGGAGGAGACCAGGGGCAAAGAGCTCACCAGCCTGCAGGCCTTTGCTCTTTACACATCCATCTCCATTTTCATGAATGCAGCCATTCCCATCGCAGCTGTGTTGACGACGTTTGTGGTTCACGTTCACATCTCCGAGGACGCTGATCTGTCCCCAGCTGTGGCCTTtgcctctctgtccctctttcaCATCCTGGTCACCCCCCTCTTCCTGCTCTCCAGCGTGGTGCGCTCCACTGTCAAGGCTCTTGTTAGTGTTCAGAAGCTCAGCGAGTTTTTCTCAAGCGATGAGATTGGAGACGAGCAGGAGCCCAGAGCAATGGTAACCTCTGGCTCCAGCAATCACAACCAAAATAGATACCAGGCTGTGCCGCTGAAGGTGGTGAACCGGAAGCGCCCTCCGAGGGACGAATGGAACAACTACAGCTCACAGGGGGACCACGAGGGCGACAGACCCTACCAGGAGGTGGACCAAGACATCTGTATCAAGATAACTAGCGGTTATTTCACCTGGACCGATGGACCACCAACACTTTCTAATGTGGACATCAAGATTCCTTTTGGTAAGCTGACTATGATTGTGGGCCAGGTGGGTTGTGGAAAAtcgtctctgctgctggcaGCACTGGGAGAGATGCAGAGAGTGTCCGGAACGGTCACCTGGAACAGCCTGCCAAACCTGGAGTCTGAGGGAGATGAAAGTCCCACGGACAGAGATGCAGCAGGTGACGGAGAAATCAGGAAGAGAGGCGCTGTGGCCTACGCTTCCCAGAAGCCCTGGCTGTTGAATGCGACACTGGTGGAGAACATTACCTTTGAGATGCCCATGATCAAACCGAGGTACAACGCTGTCATCGAGGCCTGCTCTCTCCAGCCTGACATCGACATCCTTCCACAAGGGGACCAGACAGAGATCGGGGAGCGGGGTATCATCCTGTCAGGGGGACAGAAACAGCGTATCAGCGTCGCCAGAGCCTTGTACCAACAGACCCACGTGGTCTTTCTGgaTGACCCATTCTCTGCTTTAGACATCCATCTGAGTGACCATCTGATGCAGGACGGTCTGCTCAAGCTcctgagagaggagaagaggacgGTGGTGTTGGTCACACACAAACTTCAGTATCTACCACACGCagactggaTCATTGCCATGAAAGATGGCACTATCCAGACTGAAGGGACTCTGAAGGACATCCAGAACTCTGAGCCTGAACTCTTTGAGCAGTGGAAAACGCTGATGCACAGACAGGACCAGGAGTTTGAGACGGAGACGGAGGCGGCGAGTATGACAGATCTGGAGAGGAAAAACCTGCGGAGGGCCATGTACTCCAGAGACGCCGCCAGGactgaagaggaagaggaagAGGAATCCCTGGAGAGTGACGATGACGACGACCTGTCGCAGGTTATGCGTCAGCGTGCCACCATCCCCTGGCGCTCCTGCGGCACCTACCTGTCCTCCGCCGGGGTCCTCCTGCTCATCCTGCTCTTCCTGTCACAGCTGCTCAAACACTCCCTCATGGTCGCCATCGACTACTGGCTGGCACACTGGACGTCACATGTCATCGCGGCCAAGGTGGTAACAACAGCTCGGAACTGTACCGTCGTTCAGggcTGTGGCTTCAGTCACTCGTGGTATCTGTCGGTGTTCAGCGTGCTGTGCTGCCTGGGCATCGTCCTGTGTCTGTTCACCTCCGTGGCTGTGGAGTGGACCGGCCTCAAAGTGGCCAAGGAGCTCCACCACGACCTGCTCAACAAGATCATCCTGGCCCCCATGAGGCTGTTTGAGACGACTCCGCTCGGCAGCATCCTCAACAGGTTttccacagacacaaacacaatcgACCAGCACATCCCCACCACCCTGGAGTGCCTCTCCCGCTCCaccttgctgtgtgtgtctgctctgGGCGTCATCTGCTACGTGACCCCCGTCTTTCTCATCGCCCTCCTGCCACTGGCCGTCACCTGCTACTTCATCCAGAAATACTTCCGGGTGGCCTCGAGGGACCTGCAGCAGTTGGAGGACAGCACCCAACTCCCTTTACTCTGCCACTTCTCTGAGACAGTGGAAGGCCTCACCACTATAAGGGCCCTCAGGTATGAGCCCAGGTTCAGACAGAGGTTACTGCAGTACACTGACGCCAACAACAtcgcctctctctttctcacagcAGCCAACCGTTGGCTGGAGGTCCGCATGGAGTACATTGGAGCGTGTGTGGTGTTGGTGGCAGCTGTAGCCTCCATCACCAACTCTCTCTACAACCAGCTGTCCACCGGTCTGGTGGGGCTGGGACTGACGTACGCCCTCAtgGTATCCAACTACATGAACTGGATGGTGCGTAACCTGGCAGACATGGAAGTACAGCTTGGCTCAGTCAAAAGGATAAACGGCCTGCTCAAAACTGAACCAGAGAATTACGAGGGACTGCTCACTGTGTCTCAGGTCCCTGACGGCTGGCCCCGAGAGGGACAGATCAAGATCCAGAATCTGAGTGTCCGGTACGACGCCACGCTGAAGCCTGTGCTCAAAAATGTGAACGCACACATCAACCCTGGGCAGAAGgtggggATCTGTGGCAGGACAGGCAGCGGCAAATCATCTTTCTCCTTGGCCTTCTTCCGCATGGTGGACATGTTCGAGGGGAGGATTGTGATCGACGACATCGACATCTCCAAGCTGCCTCTGCAGACCCTCAGGTCTCGCTTGTCCATTATCCTCCAAGACCCCATCCTGTTCAGCGGCGCCATCCGgttcaACCTAGACCCAGAGATGAAGGCTACAGATGAGATGCTCTGGGAAGCTCTGGAGATCGCTCAGCTGAAGCCTGTTGTTAAATCCCTCCCAGGAGGCCTGGATGCCATGGTGACGGAGGGAGGAGAAAACTTCAGTCAGGGTCAGAGACAGCTGTTCTGTCTGGCCAGAGCCTTCGTCAGGAAGAGCAGCATCCTCATCATGGACGAAGCCACTGCGTCCATAGACATGGCAACGGAGAGCATCCTGCAGAAAGTGGTGATGACTGCTTTTGCTGACCGAACAGTGGTTACTATAGCACATCGCGTCCACACCATCCTGAATGCCGACCTGGTGATTGTGATGAAGAGGGGGATGATCCTGGAGTACGACAGACCCGAGGCCCTGTTGGACAAGGACGACAGCGTCTTCACCTCCTTCGTGCGAGCAGACAAGTAGcacaagaagagagagagagagcattagAGGAAGACATTCAAAGTGCAATTGTCCCATGGAAtatattcctttttttattttttaatcatgtATAATATTTGTACATAAAACATAGTTAATTCTTTgttaataaaacataaatgatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118804 lncRNA downstream 5082 26862778 ~ 26863804 (-) True G88209
TU118745 lncRNA downstream 75118 26793513 ~ 26793768 (-) True G88170
TU118738 lncRNA downstream 97494 26770410 ~ 26771392 (-) True G88163
TU118668 lncRNA downstream 319200 26547774 ~ 26549686 (-) True G88106
TU118660 lncRNA downstream 326874 26537908 ~ 26542012 (-) True G88101
XR_005639981.1 lncRNA upstream 62568 27000941 ~ 27001458 (-) True LOC120563588
TU118857 lncRNA upstream 64581 27002954 ~ 27003506 (-) False G88245
TU118855 lncRNA upstream 64718 27003091 ~ 27003506 (-) False G88245
TU118856 lncRNA upstream 64718 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA upstream 65211 27003584 ~ 27004185 (-) False G88245
XM_039808227.1 mRNA downstream 129 26865059 ~ 26868757 (-) True kcnj11
XM_039809273.1 mRNA downstream 176642 26653636 ~ 26692244 (-) True ptprjb.1
XM_039807823.1 mRNA upstream 1931 26940304 ~ 26970866 (-) False ush1c
XM_039807824.1 mRNA upstream 1931 26940304 ~ 26970864 (-) True ush1c
XM_039807834.1 mRNA upstream 47817 26986190 ~ 26990413 (-) False LOC120563586
XM_039807833.1 mRNA upstream 47817 26986190 ~ 26990412 (-) True LOC120563586
XM_039807831.1 mRNA upstream 52249 26990622 ~ 26994899 (-) True ccdc34
TU118702 other downstream 194003 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1272125 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1803398 25064752 ~ 25065488 (-) True G87803
XR_005640031.1 other downstream 2952684 23909169 ~ 23916202 (-) False LOC120563922
TU118864 other upstream 74864 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 285679 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 416599 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3783735 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4304795 31243168 ~ 31250413 (-) True G89241

Expression Profile